WormBase Tree Display for Gene: WBGene00004016
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WBGene00004016 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 3D429 | |||||
WormQTL | gene | WBGene00004016 | |||||||
WormFlux | gene | WBGene00004016 | |||||||
NDB | locus_tag | CELE_Y54F10BM.14 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004016|UniProtKB=G5EBY6 | |||||||
family | PTHR13120 | ||||||||
NCBI | gene | 3564851 | |||||||
RefSeq | protein | NM_001027738.2 | |||||||
TREEFAM | TREEFAM_ID | TF105627 | |||||||
TrEMBL | UniProtAcc | G5EBY6 | |||||||
UniProt_GCRP | UniProtAcc | G5EBY6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | phf | ||||||||
Allele (119) | |||||||||
Strain | WBStrain00006460 | ||||||||
WBStrain00055484 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00010542 | ||||||||
00010543 | |||||||||
00010544 | |||||||||
00010545 | |||||||||
00010546 | |||||||||
00112195 | |||||||||
Contained_in_operon | CEOP3075 | ||||||||
Ortholog (34) | |||||||||
Structured_description | Automated_description | Predicted to be involved in mRNA splicing, via spliceosome. Located in cytoplasm and nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and rectal muscle. Is an ortholog of human PHF5A (PHD finger protein 5A). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y54F10BM.14 | |||||||
Corresponding_transcript | Y54F10BM.14.1 | ||||||||
Other_sequence (66) | |||||||||
Associated_feature | WBsf658509 | ||||||||
WBsf991497 | |||||||||
WBsf991498 | |||||||||
WBsf1014393 | |||||||||
WBsf224500 | |||||||||
Transcription_factor | WBTranscriptionFactor000668 | ||||||||
Experimental_info | RNAi_result | WBRNAi00022700 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022702 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022701 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117629 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106641 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2000 | ||||||||
Expr1024301 | |||||||||
Expr1031923 | |||||||||
Expr1160845 | |||||||||
Expr2014897 | |||||||||
Expr2033133 | |||||||||
Drives_construct | WBCnstr00000421 | ||||||||
WBCnstr00000431 | |||||||||
Antibody | WBAntibody00000558 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (60) | |||||||||
Interaction (97) | |||||||||
Map_info | Map | III | Position | -14.7412 | Error | 0.009142 | |||
Positive | Positive_clone | Y54F10BM | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005466 | ||||||||
WBPaper00027309 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065308 | |||||||||
Remark | phf-5 was previously connected to Y54F10BM.1 [Blasiar D][030411 ck1] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |