WormBase Tree Display for Gene: WBGene00004016
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WBGene00004016 | SMap | S_parent | Sequence | CHROMOSOME_III | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | phf | ||||||
Allele (119) | |||||||
Strain | WBStrain00006460 | ||||||
WBStrain00055484 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00010542 | ||||||
00010543 | |||||||
00010544 | |||||||
00010545 | |||||||
00010546 | |||||||
00112195 | |||||||
Contained_in_operon | CEOP3075 | ||||||
Ortholog (34) | |||||||
Structured_description | Automated_description | Predicted to be involved in mRNA splicing, via spliceosome. Located in cytoplasm and nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and rectal muscle. Is an ortholog of human PHF5A (PHD finger protein 5A). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y54F10BM.14 | |||||
Corresponding_transcript | Y54F10BM.14.1 | ||||||
Other_sequence (66) | |||||||
Associated_feature | WBsf658509 | ||||||
WBsf991497 | |||||||
WBsf991498 | |||||||
WBsf1014393 | |||||||
WBsf224500 | |||||||
Transcription_factor | WBTranscriptionFactor000668 | ||||||
Experimental_info | RNAi_result | WBRNAi00022700 | Inferred_automatically | RNAi_primary | |||
WBRNAi00022702 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117630 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022701 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117629 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106641 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr2000 | ||||||
Expr1024301 | |||||||
Expr1031923 | |||||||
Expr1160845 | |||||||
Expr2014897 | |||||||
Expr2033133 | |||||||
Drives_construct | WBCnstr00000421 | ||||||
WBCnstr00000431 | |||||||
Antibody | WBAntibody00000558 | ||||||
Microarray_results (15) | |||||||
Expression_cluster (60) | |||||||
Interaction (97) | |||||||
Map_info | Map | III | Position | -14.7412 | Error | 0.009142 | |
Positive | Positive_clone | Y54F10BM | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005466 | ||||||
WBPaper00027309 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00065308 | |||||||
Remark | phf-5 was previously connected to Y54F10BM.1 [Blasiar D][030411 ck1] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |