WormBase Tree Display for Gene: WBGene00003983
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WBGene00003983 | SMap | S_parent | Sequence | Y46G5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pes-10 | Person_evidence | WBPerson266 | |||||
Sequence_name | Y46G5A.27 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_Y46G5A.27 | Accession_evidence | NDB | BX284602 | |||||
Public_name | pes-10 | ||||||||
DB_info | Database | AceView | gene | 2N136 | |||||
WormQTL | gene | WBGene00003983 | |||||||
WormFlux | gene | WBGene00003983 | |||||||
NDB | locus_tag | CELE_Y46G5A.27 | |||||||
NCBI | gene | 174920 | |||||||
RefSeq | protein | NM_064331.7 | |||||||
SwissProt | UniProtAcc | P41991 | |||||||
TREEFAM | TREEFAM_ID | TF322543 | |||||||
UniProt_GCRP | UniProtAcc | P41991 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pes | ||||||||
Allele (58) | |||||||||
Legacy_information | [C.elegansII] pk74 : Tc1 insertion, no known phenotype. No maternal transcripts, zygotic transcripts present transiently in each somatic lineage from 4-cell stage; pes-10:lacZ expression similar. [Seydoux and Fire 1994; PD] | ||||||||
Strain (18) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00045723 | ||||||||
00045724 | |||||||||
00045725 | |||||||||
00045726 | |||||||||
00045727 | |||||||||
00045728 | |||||||||
00045729 | |||||||||
00045730 | |||||||||
Ortholog (22) | |||||||||
Paralog (4) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y46G5A.27 | |||||||
Corresponding_transcript | Y46G5A.27.1 | ||||||||
Associated_feature | WBsf650674 | ||||||||
WBsf650675 | |||||||||
WBsf224114 | |||||||||
Experimental_info | RNAi_result | WBRNAi00056686 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr565 | ||||||||
Expr586 | |||||||||
Expr1010766 | |||||||||
Expr1031903 | |||||||||
Expr1160155 | |||||||||
Expr2014831 | |||||||||
Expr2033065 | |||||||||
Drives_construct (30) | |||||||||
Construct_product | WBCnstr00000234 | ||||||||
WBCnstr00017356 | |||||||||
Microarray_results (13) | |||||||||
Expression_cluster (142) | |||||||||
Interaction (25) | |||||||||
Map_info | Map | II | Position | 11.8113 | Error | 0.091506 | |||
Positive | Positive_clone | Y46G5A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (69) | |||||||||
Remark | This gene was previously connected to F56G4.3 but this may have been in error. The new sequence connection (to Y46G5A.27) is based on details in an EMBL entry. [krb 030512] | Accession_evidence | EMBL | U15304 | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |