WormBase Tree Display for Gene: WBGene00003983
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WBGene00003983 | SMap | S_parent | Sequence | Y46G5A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pes | ||||||
Allele (58) | |||||||
Legacy_information | [C.elegansII] pk74 : Tc1 insertion, no known phenotype. No maternal transcripts, zygotic transcripts present transiently in each somatic lineage from 4-cell stage; pes-10:lacZ expression similar. [Seydoux and Fire 1994; PD] | ||||||
Strain (18) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00045723 | ||||||
00045724 | |||||||
00045725 | |||||||
00045726 | |||||||
00045727 | |||||||
00045728 | |||||||
00045729 | |||||||
00045730 | |||||||
Ortholog (22) | |||||||
Paralog | WBGene00012916 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00013278 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00007769 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00011049 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y46G5A.27 | |||||
Corresponding_transcript | Y46G5A.27.1 | ||||||
Associated_feature | WBsf650674 | ||||||
WBsf650675 | |||||||
WBsf224114 | |||||||
Experimental_info | RNAi_result | WBRNAi00056686 | Inferred_automatically | RNAi_primary | |||
Expr_pattern | Expr565 | ||||||
Expr586 | |||||||
Expr1010766 | |||||||
Expr1031903 | |||||||
Expr1160155 | |||||||
Expr2014831 | |||||||
Expr2033065 | |||||||
Drives_construct (30) | |||||||
Construct_product | WBCnstr00000234 | ||||||
WBCnstr00017356 | |||||||
Microarray_results (13) | |||||||
Expression_cluster (142) | |||||||
Interaction (25) | |||||||
Map_info | Map | II | Position | 11.8113 | Error | 0.091506 | |
Positive | Positive_clone | Y46G5A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (69) | |||||||
Remark | This gene was previously connected to F56G4.3 but this may have been in error. The new sequence connection (to Y46G5A.27) is based on details in an EMBL entry. [krb 030512] | Accession_evidence | EMBL | U15304 | |||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |