WormBase Tree Display for Gene: WBGene00003938
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| WBGene00003938 | Evidence | Person_evidence | WBPerson96 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K06B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pax-2 | Person_evidence | WBPerson96 | |||||
| Sequence_name | K06B9.5 | ||||||||
| Molecular_name | K06B9.5a | ||||||||
| K06B9.5a.1 | |||||||||
| CE29504 | |||||||||
| K06B9.5b | |||||||||
| CE48918 | |||||||||
| K06B9.5b.1 | |||||||||
| Other_name | CELE_K06B9.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pax-2 | ||||||||
| DB_info | Database | AceView | gene | 4E962 | |||||
| WormQTL | gene | WBGene00003938 | |||||||
| WormFlux | gene | WBGene00003938 | |||||||
| NDB | locus_tag | CELE_K06B9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003938|UniProtKB=Q21263 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 187062 | |||||||
| RefSeq | protein | NM_001307721.3 | |||||||
| NM_068112.4 | |||||||||
| SwissProt | UniProtAcc | Q21263 | |||||||
| UniProt_GCRP | UniProtAcc | Q21263 | |||||||
| OMIM | gene | 167409 | |||||||
| 167414 | |||||||||
| 167415 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pax | ||||||||
| Allele (103) | |||||||||
| Strain | WBStrain00031722 | ||||||||
| WBStrain00031727 | |||||||||
| WBStrain00037331 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (39) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in apoptotic process and positive regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in vulD. Human ortholog(s) of this gene implicated in several diseases, including congenital nongoitrous hypothyroidism 2; focal segmental glomerulosclerosis 7; and renal Wilms' tumor. Is an ortholog of human PAX2 (paired box 2); PAX5 (paired box 5); and PAX8 (paired box 8). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5176 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8616) | ||||
| DOID:2154 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8616) | ||||||
| DOID:0111132 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8616) | ||||||
| DOID:0090006 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8616) | ||||||
| DOID:9952 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8619) | ||||||
| DOID:0050328 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8622) | ||||||
| DOID:0070124 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8622) | ||||||
| DOID:784 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8616) | ||||||
| Molecular_info | Corresponding_CDS | K06B9.5a | |||||||
| K06B9.5b | |||||||||
| Corresponding_transcript | K06B9.5a.1 | ||||||||
| K06B9.5b.1 | |||||||||
| Other_sequence | MI04403 | ||||||||
| EY470995.1 | |||||||||
| ACC27867_1 | |||||||||
| MI01775 | |||||||||
| Hbac_isotig05010 | |||||||||
| MIC01367_1 | |||||||||
| Associated_feature | WBsf651722 | ||||||||
| WBsf978823 | |||||||||
| WBsf996206 | |||||||||
| WBsf996207 | |||||||||
| WBsf996208 | |||||||||
| WBsf996209 | |||||||||
| WBsf1017206 | |||||||||
| WBsf1017207 | |||||||||
| WBsf1017208 | |||||||||
| WBsf229951 | |||||||||
| Gene_product_binds | WBsf027925 | ||||||||
| Transcription_factor | WBTranscriptionFactor000104 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00101786 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00114718 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050052 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016675 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4657 | ||||||||
| Expr1153747 | |||||||||
| Expr2014757 | |||||||||
| Expr2032991 | |||||||||
| Drives_construct | WBCnstr00000580 | ||||||||
| WBCnstr00007781 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (44) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Map | IV | Position | -0.160571 | Error | 0.019025 | |||
| Positive | Positive_clone | K06B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4997 | |||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Picture | WBPicture0000013091 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
