WormBase Tree Display for Gene: WBGene00003805
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| WBGene00003805 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R06F6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-19 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | R06F6.5 | ||||||||
| Molecular_name | R06F6.5a | ||||||||
| R06F6.5a.1 | |||||||||
| CE01621 | |||||||||
| R06F6.5b | |||||||||
| CE18121 | |||||||||
| R06F6.5b.1 | |||||||||
| Other_name | CeNup35 | Person_evidence | WBPerson1780 | ||||||
| Nup35 | Paper_evidence | WBPaper00026834 | |||||||
| CELE_R06F6.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | npp-19 | ||||||||
| DB_info | Database | AceView | gene | 2L88 | |||||
| WormQTL | gene | WBGene00003805 | |||||||
| WormFlux | gene | WBGene00003805 | |||||||
| NDB | locus_tag | CELE_R06F6.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003805|UniProtKB=Q09601 | |||||||
| family | PTHR21527 | ||||||||
| NCBI | gene | 174663 | |||||||
| RefSeq | protein | NM_063924.7 | |||||||
| NM_063923.7 | |||||||||
| SwissProt | UniProtAcc | Q09601 | |||||||
| TREEFAM | TREEFAM_ID | TF325369 | |||||||
| UniProt_GCRP | UniProtAcc | Q09601 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00003586 | ||||||||
| WBStrain00003838 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Contained_in_operon | CEOP2504 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to enable phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Involved in embryo development; nucleus organization; and regulation of exit from mitosis. Located in nuclear envelope. Part of nuclear pore. Is an ortholog of human NUP35 (nucleoporin 35). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R06F6.5a | |||||||
| R06F6.5b | |||||||||
| Corresponding_transcript | R06F6.5a.1 | ||||||||
| R06F6.5b.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf650518 | ||||||||
| WBsf650519 | |||||||||
| WBsf666064 | |||||||||
| WBsf989486 | |||||||||
| WBsf989487 | |||||||||
| WBsf989488 | |||||||||
| WBsf1013096 | |||||||||
| WBsf1013097 | |||||||||
| WBsf223840 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr6470 | ||||||||
| Expr8645 | |||||||||
| Expr9023 | |||||||||
| Expr1023531 | |||||||||
| Expr1031791 | |||||||||
| Expr1155087 | |||||||||
| Expr2014378 | |||||||||
| Expr2032619 | |||||||||
| Drives_construct | WBCnstr00004038 | ||||||||
| WBCnstr00035857 | |||||||||
| Construct_product | WBCnstr00005565 | ||||||||
| WBCnstr00013416 | |||||||||
| WBCnstr00013680 | |||||||||
| WBCnstr00015877 | |||||||||
| WBCnstr00035857 | |||||||||
| Antibody | WBAntibody00001026 | ||||||||
| WBAntibody00001892 | |||||||||
| WBAntibody00001894 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | II | Position | 3.12729 | Error | 6.8e-05 | |||
| Positive | Positive_clone | R06F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006202 | ||||||||
| WBPaper00026722 | |||||||||
| WBPaper00026834 | |||||||||
| WBPaper00028457 | |||||||||
| WBPaper00032497 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063941 | |||||||||
| WBPaper00064947 | |||||||||
| WBPaper00065742 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
