WormBase Tree Display for Gene: WBGene00003793
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| WBGene00003793 | SMap | S_parent | Sequence | T19B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-7 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | T19B4.2 | ||||||||
| Molecular_name | T19B4.2 | ||||||||
| T19B4.2.1 | |||||||||
| CE13738 | |||||||||
| Other_name | Nup153 | Paper_evidence | WBPaper00026834 | ||||||
| CELE_T19B4.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | npp-7 | ||||||||
| DB_info | Database | AceView | gene | 1G265 | |||||
| WormQTL | gene | WBGene00003793 | |||||||
| WormFlux | gene | WBGene00003793 | |||||||
| NDB | locus_tag | CELE_T19B4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003793|UniProtKB=P91457 | |||||||
| family | PTHR23193 | ||||||||
| NCBI | gene | 172234 | |||||||
| RefSeq | protein | NM_001383135.2 | |||||||
| TREEFAM | TREEFAM_ID | TF318746 | |||||||
| TrEMBL | UniProtAcc | P91457 | |||||||
| UniProt_GCRP | UniProtAcc | P91457 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00035707 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00003800 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Involved in several processes, including determination of adult lifespan; nucleus organization; and regulation of exit from mitosis. Located in nuclear membrane. Part of nuclear pore. Is an ortholog of human POM121 (POM121 transmembrane nucleoporin) and POM121C (POM121 transmembrane nucleoporin C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T19B4.2 | |||||||
| Corresponding_transcript | T19B4.2.1 | ||||||||
| Other_sequence | CBC10998_1 | ||||||||
| EY460248.1 | |||||||||
| EY463222.1 | |||||||||
| ACC08505_1 | |||||||||
| Dviv_isotig22865 | |||||||||
| Associated_feature | WBsf643305 | ||||||||
| WBsf656323 | |||||||||
| WBsf983750 | |||||||||
| WBsf217696 | |||||||||
| WBsf217697 | |||||||||
| WBsf217698 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr9021 | ||||||||
| Expr1017188 | |||||||||
| Expr1031779 | |||||||||
| Expr1157066 | |||||||||
| Expr2014392 | |||||||||
| Expr2032633 | |||||||||
| Drives_construct | WBCnstr00018638 | ||||||||
| WBCnstr00035864 | |||||||||
| Construct_product | WBCnstr00006027 | ||||||||
| WBCnstr00013678 | |||||||||
| WBCnstr00018638 | |||||||||
| WBCnstr00035864 | |||||||||
| Antibody | WBAntibody00001024 | ||||||||
| WBAntibody00001890 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Map | I | Position | 0.357723 | Error | 0.013604 | |||
| Positive | Positive_clone | T19B4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4545 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006202 | ||||||||
| WBPaper00026834 | |||||||||
| WBPaper00028457 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063506 | |||||||||
| WBPaper00065374 | |||||||||
| WBPaper00065742 | |||||||||
| Remark | Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
