WormBase Tree Display for Gene: WBGene00003715
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| WBGene00003715 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-125 | Person_evidence | WBPerson600 | |||||
| Sequence_name | R02D1.1 | ||||||||
| Molecular_name | R02D1.1a | ||||||||
| R02D1.1a.1 | |||||||||
| CE30823 | |||||||||
| R02D1.1b | |||||||||
| CE51631 | |||||||||
| R02D1.1b.1 | |||||||||
| Other_name | CELE_R02D1.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-125 | ||||||||
| DB_info | Database | AceView | gene | 5E796 | |||||
| WormQTL | gene | WBGene00003715 | |||||||
| WormFlux | gene | WBGene00003715 | |||||||
| NDB | locus_tag | CELE_R02D1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003715|UniProtKB=O17082 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 187520 | |||||||
| RefSeq | protein | NM_001330851.3 | |||||||
| NM_071793.6 | |||||||||
| SwissProt | UniProtAcc | O17082 | |||||||
| TrEMBL | UniProtAcc | A0A168H9N2 | |||||||
| UniProt_GCRP | UniProtAcc | O17082 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (92) | |||||||||
| Strain | WBStrain00036483 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002351 | ||||||||
| 00002352 | |||||||||
| 00002353 | |||||||||
| 00002354 | |||||||||
| 00111657 | |||||||||
| 00111658 | |||||||||
| 00111659 | |||||||||
| 00111660 | |||||||||
| Ortholog (22) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R02D1.1a | |||||||
| R02D1.1b | |||||||||
| Corresponding_transcript | R02D1.1a.1 | ||||||||
| R02D1.1b.1 | |||||||||
| Other_sequence | PT00031 | ||||||||
| Associated_feature | WBsf652564 | ||||||||
| WBsf999768 | |||||||||
| WBsf1019481 | |||||||||
| Transcription_factor | WBTranscriptionFactor000538 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00112731 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051121 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017311 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112732 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034525 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018599 | ||||||||
| Expr1154830 | |||||||||
| Expr2014024 | |||||||||
| Expr2032264 | |||||||||
| Drives_construct | WBCnstr00035924 | ||||||||
| Construct_product | WBCnstr00035924 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction | WBInteraction000190638 | ||||||||
| WBInteraction000214464 | |||||||||
| WBInteraction000249053 | |||||||||
| WBInteraction000387314 | |||||||||
| WBInteraction000407394 | |||||||||
| WBInteraction000422611 | |||||||||
| WBInteraction000430113 | |||||||||
| WBInteraction000447864 | |||||||||
| Map_info | Map | V | Position | -5.97246 | Error | 0.008613 | |||
| Positive | Positive_clone | R02D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00059258 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
