WormBase Tree Display for Gene: WBGene00003709
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WBGene00003709 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nhr-119 | Person_evidence | WBPerson600 | |||||
Sequence_name | K12H6.1 | ||||||||
Molecular_name | K12H6.1 | ||||||||
K12H6.1.1 | |||||||||
CE44851 | |||||||||
Other_name | Y110A2B.a | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_K12H6.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | nhr-119 | ||||||||
DB_info | Database | AceView | gene | 2D86 | |||||
WormQTL | gene | WBGene00003709 | |||||||
WormFlux | gene | WBGene00003709 | |||||||
NDB | locus_tag | CELE_K12H6.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003709|UniProtKB=G4SCE4 | |||||||
family | PTHR47519 | ||||||||
NCBI | gene | 187340 | |||||||
RefSeq | protein | NM_061967.4 | |||||||
TREEFAM | TREEFAM_ID | TF315278 | |||||||
TrEMBL | UniProtAcc | G4SCE4 | |||||||
UniProt_GCRP | UniProtAcc | G4SCE4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 06 May 2010 10:03:44 | WBPerson1867 | Event | Acquires_merge | WBGene00017256 | ||||
Acquires_merge | WBGene00017256 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (256) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00009243 | ||||||||
00009244 | |||||||||
00009245 | |||||||||
00009246 | |||||||||
00111633 | |||||||||
00111634 | |||||||||
00111635 | |||||||||
00111636 | |||||||||
Ortholog (34) | |||||||||
Paralog (15) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in hypodermis and intestine. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K12H6.1 | |||||||
Corresponding_CDS_history | K12H6.1:wp214 | ||||||||
Corresponding_transcript | K12H6.1.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf978719 | ||||||||
WBsf987062 | |||||||||
WBsf987063 | |||||||||
WBsf1011773 | |||||||||
Transcription_factor | WBTranscriptionFactor000332 | ||||||||
Experimental_info | RNAi_result | WBRNAi00043989 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012878 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017069 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030644 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019867 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050695 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081647 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012879 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034322 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050694 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7617 | ||||||||
Expr1014618 | |||||||||
Expr1031727 | |||||||||
Expr1154396 | |||||||||
Expr2014017 | |||||||||
Expr2032257 | |||||||||
Drives_construct | WBCnstr00012762 | ||||||||
Microarray_results (40) | |||||||||
Expression_cluster (110) | |||||||||
Interaction | WBInteraction000406890 | ||||||||
WBInteraction000533625 | |||||||||
WBInteraction000573483 | |||||||||
WBInteraction000574489 | |||||||||
Map_info | Map | II | Position | -10.9161 | Error | 0.16119 | |||
Positive | Positive_clone | K12H6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4329 | |||||||
5434 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026592 | ||||||||
WBPaper00027309 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065331 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |