WormBase Tree Display for Gene: WBGene00003708
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| WBGene00003708 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-118 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F13A2.8 | ||||||||
| Molecular_name | F13A2.8 | ||||||||
| F13A2.8.1 | |||||||||
| CE51571 | |||||||||
| Other_name | Y47D7A.k | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F13A2.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-118 | ||||||||
| DB_info | Database | AceView | gene | 5E883 | |||||
| WormQTL | gene | WBGene00003708 | |||||||
| WormFlux | gene | WBGene00003708 | |||||||
| NDB | locus_tag | CELE_F13A2.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003708|UniProtKB=O16890 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 184398 | |||||||
| RefSeq | protein | NM_001330866.1 | |||||||
| TREEFAM | TREEFAM_ID | TF315528 | |||||||
| TrEMBL | UniProtAcc | O16890 | |||||||
| UniProt_GCRP | UniProtAcc | O16890 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 23 Sep 2005 10:36:25 | WBPerson1867 | Event | Acquires_merge | WBGene00021618 | ||||
| Acquires_merge | WBGene00021618 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00036801 | ||||||||
| WBStrain00036890 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (12) | |||||||||
| Paralog (250) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13A2.8 | |||||||
| Corresponding_CDS_history | F13A2.8:wp149 | ||||||||
| F13A2.8:wp253 | |||||||||
| Corresponding_transcript | F13A2.8.1 | ||||||||
| Other_sequence | BXC07507_1 | ||||||||
| BUC01119_1 | |||||||||
| Transcription_factor | WBTranscriptionFactor000407 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00056785 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044463 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015062 | ||||||||
| Expr1148410 | |||||||||
| Expr2014016 | |||||||||
| Expr2032256 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (17) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | V | Position | -5.64929 | Error | 0.037543 | |||
| Positive | Positive_clone | F13A2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
