WormBase Tree Display for Gene: WBGene00003707
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WBGene00003707 | SMap | S_parent | Sequence | Y46H3D | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-117 | Person_evidence | WBPerson600 | |||||
Sequence_name | F16B4.12 | ||||||||
Molecular_name | F16B4.12a | ||||||||
F16B4.12a.1 | |||||||||
CE24906 | |||||||||
F16B4.12b | |||||||||
CE30756 | |||||||||
F16B4.12b.1 | |||||||||
F16B4.12c | |||||||||
Other_name | CELE_F16B4.12 | Accession_evidence | NDB | BX284605 | |||||
Public_name | nhr-117 | ||||||||
DB_info | Database | AceView | gene | 5C98 | |||||
WormQTL | gene | WBGene00003707 | |||||||
NDB | locus_tag | CELE_F16B4.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003707|UniProtKB=O44638 | |||||||
family | PTHR45680 | ||||||||
NCBI | gene | 24104436 | |||||||
RefSeq | protein | NR_132511.1 | |||||||
NM_001307790.4 | |||||||||
NM_001307789.5 | |||||||||
TrEMBL | UniProtAcc | Q8MNW2 | |||||||
O44638 | |||||||||
UniProt_GCRP | UniProtAcc | O44638 | |||||||
RNAcentral | URSid | URS0000865531 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (46) | |||||||||
Strain | WBStrain00036642 | ||||||||
WBStrain00036663 | |||||||||
WBStrain00036686 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00033004 | ||||||||
00033005 | |||||||||
00033006 | |||||||||
00033007 | |||||||||
00111625 | |||||||||
00111626 | |||||||||
00111627 | |||||||||
00111628 | |||||||||
Ortholog (35) | |||||||||
Paralog (217) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in terminal bulb. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F16B4.12a | |||||||
F16B4.12b | |||||||||
Corresponding_transcript | F16B4.12c | ||||||||
F16B4.12a.1 | |||||||||
F16B4.12b.1 | |||||||||
Other_sequence | CBC01358_1 | ||||||||
Associated_feature | WBsf652474 | ||||||||
WBsf978788 | |||||||||
WBsf999372 | |||||||||
WBsf1019204 | |||||||||
WBsf233342 | |||||||||
WBsf233343 | |||||||||
Transcription_factor | WBTranscriptionFactor000680 | ||||||||
Experimental_info | RNAi_result | WBRNAi00044787 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044786 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031028 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9737 | ||||||||
Expr9756 | |||||||||
Expr9805 | |||||||||
Expr1027021 | |||||||||
Expr1148752 | |||||||||
Expr2014015 | |||||||||
Expr2032255 | |||||||||
Drives_construct (4) | |||||||||
Construct_product | WBCnstr00035928 | ||||||||
Microarray_results (27) | |||||||||
Expression_cluster (144) | |||||||||
Interaction | WBInteraction000199010 | ||||||||
WBInteraction000226653 | |||||||||
WBInteraction000230366 | |||||||||
WBInteraction000256634 | |||||||||
WBInteraction000351983 | |||||||||
WBInteraction000390399 | |||||||||
WBInteraction000396102 | |||||||||
WBInteraction000433712 | |||||||||
WBInteraction000519267 | |||||||||
Map_info | Map | V | Position | -17.8745 | Error | 0.007514 | |||
Positive | Positive_clone | F16B4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00028802 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |