WormBase Tree Display for Gene: WBGene00003694
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| WBGene00003694 | SMap | S_parent | Sequence | R11E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-104 | Person_evidence | WBPerson600 | |||||
| Sequence_name | R11E3.5 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_R11E3.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-104 | ||||||||
| DB_info | Database | AceView | gene | 4F550 | |||||
| WormQTL | gene | WBGene00003694 | |||||||
| WormFlux | gene | WBGene00003694 | |||||||
| NDB | locus_tag | CELE_R11E3.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003694|UniProtKB=H2L0B0 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 177248 | |||||||
| RefSeq | protein | NM_001028171.5 | |||||||
| NM_171326.5 | |||||||||
| NM_001306920.3 | |||||||||
| NM_171327.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| TrEMBL | UniProtAcc | Q86PJ5 | |||||||
| S6FD08 | |||||||||
| Q8MXE5 | |||||||||
| H2L0B0 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0B0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (68) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (23) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-104 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. | Paper_evidence | WBPaper00003416 | |||||
| Person_evidence | WBPerson600 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R11E3.5a | |||||||
| R11E3.5b | |||||||||
| R11E3.5c | |||||||||
| R11E3.5d | |||||||||
| Corresponding_CDS_history | R11E3.5:wp83 | ||||||||
| Corresponding_transcript | R11E3.5a.1 | ||||||||
| R11E3.5b.1 | |||||||||
| R11E3.5c.1 | |||||||||
| R11E3.5d.1 | |||||||||
| Other_sequence | CSC00454_1 | ||||||||
| FC818318.1 | |||||||||
| SRC00901_1 | |||||||||
| CBC06463_1 | |||||||||
| FD516179.1 | |||||||||
| Associated_feature | WBsf651780 | ||||||||
| WBsf667914 | |||||||||
| WBsf981753 | |||||||||
| WBsf996395 | |||||||||
| WBsf1017313 | |||||||||
| WBsf230016 | |||||||||
| WBsf230017 | |||||||||
| Transcription_factor | WBTranscriptionFactor000509 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115809 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051791 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025244 | ||||||||
| Expr1031721 | |||||||||
| Expr1155452 | |||||||||
| Expr2014001 | |||||||||
| Expr2032241 | |||||||||
| Drives_construct | WBCnstr00035939 | ||||||||
| Construct_product | WBCnstr00035939 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction | WBInteraction000526755 | ||||||||
| WBInteraction000526756 | |||||||||
| WBInteraction000529521 | |||||||||
| Map_info | Map | IV | Position | 1.05326 | Error | 0.02272 | |||
| Positive | Positive_clone | R11E3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | R11E3.5c isoform was removed [030417 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
