WormBase Tree Display for Gene: WBGene00003641
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| WBGene00003641 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K06B4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-51 | Person_evidence | WBPerson600 | |||||
| Sequence_name | K06B4.1 | ||||||||
| Molecular_name | K06B4.1 | ||||||||
| K06B4.1.1 | |||||||||
| CE35582 | |||||||||
| Other_name | CELE_K06B4.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-51 | ||||||||
| DB_info | Database | AceView | gene | 5Q159 | |||||
| WormQTL | gene | WBGene00003641 | |||||||
| WormFlux | gene | WBGene00003641 | |||||||
| NDB | locus_tag | CELE_K06B4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003641|UniProtKB=O17927 | |||||||
| family | PTHR45886 | ||||||||
| NCBI | gene | 180052 | |||||||
| RefSeq | protein | NM_074497.5 | |||||||
| SwissProt | UniProtAcc | O17927 | |||||||
| TREEFAM | TREEFAM_ID | TF315970 | |||||||
| UniProt_GCRP | UniProtAcc | O17927 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00036487 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031067 | ||||||||
| 00031068 | |||||||||
| 00031069 | |||||||||
| 00031070 | |||||||||
| 00111370 | |||||||||
| 00111371 | |||||||||
| 00111372 | |||||||||
| 00111373 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head neurons; intestine; and tail neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K06B4.1 | |||||||
| Corresponding_CDS_history | K06B4.1:wp20 | ||||||||
| K06B4.1:wp109 | |||||||||
| Corresponding_transcript | K06B4.1.1 | ||||||||
| Other_sequence | CBC11960_1 | ||||||||
| Associated_feature | WBsf647604 | ||||||||
| Transcription_factor | WBTranscriptionFactor000431 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00016661 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001009 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050037 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7608 | ||||||||
| Expr1010528 | |||||||||
| Expr1031685 | |||||||||
| Expr1153731 | |||||||||
| Expr2014201 | |||||||||
| Expr2032442 | |||||||||
| Drives_construct | WBCnstr00012753 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (60) | |||||||||
| Interaction | WBInteraction000030298 | ||||||||
| WBInteraction000030565 | |||||||||
| WBInteraction000190466 | |||||||||
| WBInteraction000323141 | |||||||||
| WBInteraction000456784 | |||||||||
| WBInteraction000512527 | |||||||||
| WBInteraction000512528 | |||||||||
| WBInteraction000512529 | |||||||||
| Map_info | Map | V | Position | 8.58885 | Error | 0.01327 | |||
| Positive | Positive_clone | K06B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | AF273797 - cDNA links nhr-51 and nhr-52, with both orfs in message, but in different frames, linked by noncoding region out of which a 1566 base intron has been spliced [Sluder A][030102 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
