WormBase Tree Display for Gene: WBGene00003636
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WBGene00003636 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C45E5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-46 | Person_evidence | WBPerson600 | |||||
Sequence_name | C45E5.6 | ||||||||
Molecular_name | C45E5.6a | ||||||||
C45E5.6a.1 | |||||||||
CE08734 | |||||||||
C45E5.6b | |||||||||
CE29226 | |||||||||
C45E5.6c | |||||||||
CE29227 | |||||||||
C45E5.6b.1 | |||||||||
C45E5.6c.1 | |||||||||
Other_name | CELE_C45E5.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nhr-46 | ||||||||
DB_info | Database | AceView | gene | 4G512 | |||||
WormQTL | gene | WBGene00003636 | |||||||
WormFlux | gene | WBGene00003636 | |||||||
NDB | locus_tag | CELE_C45E5.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003636|UniProtKB=Q95QR2 | |||||||
family | PTHR47630 | ||||||||
NCBI | gene | 177350 | |||||||
RefSeq | protein | NM_001380240.1 | |||||||
NM_068457.6 | |||||||||
NM_001027894.8 | |||||||||
TREEFAM | TREEFAM_ID | TF315528 | |||||||
TrEMBL | UniProtAcc | Q95QR2 | |||||||
Q95QR3 | |||||||||
H2KZB8 | |||||||||
UniProt_GCRP | UniProtAcc | Q95QR2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (112) | |||||||||
Strain | WBStrain00036574 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022194 | ||||||||
00022195 | |||||||||
00022196 | |||||||||
00022197 | |||||||||
00111350 | |||||||||
00111351 | |||||||||
00111352 | |||||||||
00111353 | |||||||||
Ortholog (36) | |||||||||
Paralog (217) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in several structures, including hypodermis; intestine; muscle cell; neurons; and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C45E5.6a | |||||||
C45E5.6b | |||||||||
C45E5.6c | |||||||||
Corresponding_CDS_history | C45E5.6d:wp275 | ||||||||
Corresponding_transcript | C45E5.6a.1 | ||||||||
C45E5.6b.1 | |||||||||
C45E5.6c.1 | |||||||||
Other_sequence (20) | |||||||||
Associated_feature (20) | |||||||||
Transcription_factor | WBTranscriptionFactor000370 | ||||||||
Experimental_info | RNAi_result | WBRNAi00115810 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029833 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011981 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9816 | ||||||||
Expr9835 | |||||||||
Expr1018751 | |||||||||
Expr1031680 | |||||||||
Expr1146518 | |||||||||
Expr2014195 | |||||||||
Expr2032436 | |||||||||
Drives_construct | WBCnstr00014336 | ||||||||
WBCnstr00014355 | |||||||||
WBCnstr00035980 | |||||||||
Construct_product | WBCnstr00035980 | ||||||||
Microarray_results (43) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (51) | |||||||||
Map_info | Map | IV | Position | 2.26421 | Error | 0.004295 | |||
Positive | Positive_clone | C45E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005859 | ||||||||
WBPaper00027309 | |||||||||
WBPaper00054872 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |