WormBase Tree Display for Gene: WBGene00003623
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| WBGene00003623 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00004124 | |||||||||
| WBPaper00004329 | |||||||||
| SMap | S_parent | Sequence | F11C1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-25 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F11C1.6 | ||||||||
| Molecular_name | F11C1.6a | ||||||||
| F11C1.6a.1 | |||||||||
| CE03191 | |||||||||
| F11C1.6b | |||||||||
| CE35856 | |||||||||
| F11C1.6a.2 | |||||||||
| F11C1.6b.1 | |||||||||
| Other_name | CELE_F11C1.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhr-25 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (94) | |||||||||
| Legacy_information | [M Asahina] jm2389 is mutagenized using TMP/UV and detected a deletion by PCR. This removes the coding region from Gly40 in the P-box of the first zinc finger motif to Ser377 in the middle of the conserved region II within the LBD (ref. Asahina M et al. 2000 The conserved nuclear receptor Ftz-F1 is required for embryogenesis, moulting and reproduction in Caenorhabditis elegans. Genes to Cells 5: 711). Phenotype is homozygous embryonic lethal at 1.5-fold to 2-fold stage. Balanced with +/szT1[lon-2(e678)] I; nDf19/szT1 X (strain MT1401) | ||||||||
| Strain (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (52) | |||||||||
| Paralog (17) | |||||||||
| Structured_description (2) | |||||||||
| Disease_info | Potential_model | DOID:0111764 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7983) | ||||
| DOID:905 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7983) | ||||||
| DOID:0070169 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7983) | ||||||
| DOID:0111772 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7983) | ||||||
| DOID:0080864 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7983) | ||||||
| DOID:219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7984) | ||||||
| Molecular_info | Corresponding_CDS | F11C1.6a | |||||||
| F11C1.6b | |||||||||
| Corresponding_transcript | F11C1.6a.1 | ||||||||
| F11C1.6a.2 | |||||||||
| F11C1.6b.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (24) | |||||||||
| Gene_product_binds (378) | |||||||||
| Transcription_factor | WBTranscriptionFactor000597 | ||||||||
| Experimental_info | RNAi_result (143) | ||||||||
| Expr_pattern (27) | |||||||||
| Drives_construct (13) | |||||||||
| Construct_product (13) | |||||||||
| Regulate_expr_cluster | WBPaper00045015:nhr-25(RNAi)_downregulated | ||||||||
| WBPaper00045015:nhr-25(RNAi)_upregulated | |||||||||
| Antibody | WBAntibody00000832 | ||||||||
| WBAntibody00002489 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (213) | |||||||||
| Interaction (111) | |||||||||
| Product_binds_matrix | WBPmat00005568 | ||||||||
| WBPmat00005572 | |||||||||
| Map_info | Map | X | Position | 9.49412 | Error | 0.083721 | |||
| Positive | Positive_clone | F11C1 | Person_evidence | WBPerson29 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4522 | |||||||
| 4883 | |||||||||
| 5332 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (96) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
