WormBase Tree Display for Gene: WBGene00003602
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WBGene00003602 | Evidence | Paper_evidence | WBPaper00003416 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | H01A20 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (52) | |||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y52F5 etc. [AE] | |||||||
Strain | WBStrain00031765 | ||||||
WBStrain00035820 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Ortholog (27) | |||||||
Paralog (219) | |||||||
Structured_description | Concise_description | nhr-3 encodes a member of the superfamily of nuclear receptors which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; nhr-3 has been identified and characterised as a gene affected by ethanol exposure in a microarray analysis of all C. elegans ORFs. | Paper_evidence | WBPaper00003416 | |||
WBPaper00006412 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 16 Nov 2005 00:00:00 | ||||||
Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in hormone-mediated signaling pathway; regulation of transcription by RNA polymerase II; and tissue development. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Expressed in head neurons; hypodermis; muscle cell; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | H01A20.1 | |||||
Corresponding_transcript | H01A20.1.1 | ||||||
Other_sequence (38) | |||||||
Associated_feature (20) | |||||||
Transcription_factor | WBTranscriptionFactor000358 | ||||||
Experimental_info | RNAi_result | WBRNAi00016157 | Inferred_automatically | RNAi_primary | |||
WBRNAi00049252 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107345 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033638 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7596 | ||||||
Expr7964 | |||||||
Expr1019816 | |||||||
Expr1031651 | |||||||
Expr1152994 | |||||||
Expr2014188 | |||||||
Expr2032429 | |||||||
Drives_construct | WBCnstr00012741 | ||||||
WBCnstr00013028 | |||||||
WBCnstr00036010 | |||||||
Construct_product | WBCnstr00036010 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (223) | |||||||
Interaction (15) | |||||||
Map_info | Map | X | Position | 16.7469 | Error | 0.003853 | |
Positive | Positive_clone | H01A20 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Y43C6 | Person_evidence | WBPerson600 | |||||
Y52C11 | Person_evidence | WBPerson600 | |||||
Y52F5 | Person_evidence | WBPerson600 | |||||
Mapping_data | Multi_point | 4518 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00003416 | ||||||
WBPaper00006465 | |||||||
WBPaper00027309 | |||||||
WBPaper00031532 | |||||||
Remark | Sluder et al., 1999 [021217 ck1] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |