WormBase Tree Display for Gene: WBGene00003470
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WBGene00003470 | SMap | S_parent | Sequence | ZK546 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | msp | ||||||
Allele | WBVar01499702 | ||||||
WBVar01498435 | |||||||
WBVar00728973 | |||||||
WBVar00728974 | |||||||
WBVar00728975 | |||||||
WBVar00365113 | |||||||
WBVar01783278 | |||||||
WBVar01783279 | |||||||
Legacy_information | Cluster of five genes including msp-152 (transcribed). | ||||||
[C.elegansII] NMK. Encodes MSP (16kD). Defines cluster of five genes including msp-152 (transcribed). [Ward et al. (1988); BA] | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00078717 | ||||||
00078718 | |||||||
00078719 | |||||||
00078720 | |||||||
00078721 | |||||||
Ortholog (31) | |||||||
Paralog (50) | |||||||
Structured_description | Concise_description | msp-152 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||
WBPaper00002143 | |||||||
WBPaper00003113 | |||||||
WBPaper00004591 | |||||||
WBPaper00005670 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 17 May 2005 00:00:00 | ||||||
Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK546.6 | |||||
Corresponding_transcript | ZK546.6.1 | ||||||
Other_sequence (25) | |||||||
Associated_feature | WBsf221202 | ||||||
Experimental_info | RNAi_result (20) | ||||||
Expr_pattern | Expr3417 | ||||||
Expr1162926 | |||||||
Expr2013771 | |||||||
Expr2032007 | |||||||
Drives_construct | WBCnstr00036097 | ||||||
Construct_product | WBCnstr00036097 | ||||||
Antibody | WBAntibody00000037 | ||||||
WBAntibody00000038 | |||||||
WBAntibody00000854 | |||||||
WBAntibody00000855 | |||||||
WBAntibody00000856 | |||||||
WBAntibody00000857 | |||||||
WBAntibody00000858 | |||||||
Microarray_results (8) | |||||||
Expression_cluster (241) | |||||||
Interaction (218) | |||||||
Map_info | Map | II | Position | -2.90252 | Error | 0.003087 | |
Positive | Positive_clone | BA#53 | |||||
ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00001023 | ||||||
WBPaper00001024 | |||||||
WBPaper00024312 | |||||||
WBPaper00025088 | |||||||
WBPaper00029226 | |||||||
WBPaper00031218 | |||||||
WBPaper00040308 | |||||||
WBPaper00044625 | |||||||
WBPaper00057218 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |