WormBase Tree Display for Gene: WBGene00003451
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WBGene00003451 | SMap | S_parent | Sequence | ZK354 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | ||||||||
Name | CGC_name | msp-58 | Person_evidence | WBPerson680 | ||||||
Sequence_name | ZK354.10 | |||||||||
Molecular_name | ZK354.10 | |||||||||
ZK354.10.1 | ||||||||||
CE48426 | ||||||||||
Other_name | msp-58ps | |||||||||
CELE_ZK354.10 | Accession_evidence | NDB | BX284604 | |||||||
Public_name | msp-58 | |||||||||
DB_info | Database | AceView | gene | 4G73 | ||||||
NDB | locus_tag | CELE_ZK354.10 | ||||||||
Panther | gene | CAEEL|WormBase=WBGene00003451|UniProtKB=S6CPF4 | ||||||||
family | PTHR22920 | |||||||||
NCBI | gene | 13193876 | ||||||||
RefSeq | protein | NM_001307286.3 | ||||||||
TrEMBL | UniProtAcc | S6CPF4 | ||||||||
UniProt_GCRP | UniProtAcc | S6CPF4 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
2 | 04 Jul 2013 17:41:31 | WBPerson615 | Event | Changed_class | Pseudogene | CDS | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0001217 | ||||||||
Gene_class | msp | |||||||||
Allele | WBVar01499365 | |||||||||
WBVar01499395 | ||||||||||
WBVar01499396 | ||||||||||
WBVar01499242 | ||||||||||
WBVar01499633 | ||||||||||
WBVar00909712 | ||||||||||
WBVar00424958 | ||||||||||
WBVar01500245 | ||||||||||
RNASeq_FPKM (74) | ||||||||||
GO_annotation | 00104909 | |||||||||
00104910 | ||||||||||
00104911 | ||||||||||
00104912 | ||||||||||
00104913 | ||||||||||
Ortholog (11) | ||||||||||
Paralog (46) | ||||||||||
Structured_description | Concise_description | msp-58 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | ||||||
WBPaper00002143 | ||||||||||
WBPaper00004591 | ||||||||||
WBPaper00005670 | ||||||||||
Curator_confirmed | WBPerson324 | |||||||||
Date_last_updated | 31 Mar 2005 00:00:00 | |||||||||
Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | |||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS | ZK354.10 | ||||||||
Corresponding_transcript | ZK354.10.1 | |||||||||
Corresponding_pseudogene_history | ZK354.10:wp238 | |||||||||
Other_sequence | DA02310 | |||||||||
CR11135 | ||||||||||
Associated_feature | WBsf996482 | |||||||||
Experimental_info | RNAi_result | WBRNAi00021967 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00021968 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00051950 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00051312 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00020810 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00021963 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00017455 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00010515 | Inferred_automatically | RNAi_primary | ||||||||
Expr_pattern | Expr3417 | |||||||||
Expr2013785 | ||||||||||
Antibody | WBAntibody00000037 | |||||||||
WBAntibody00000038 | ||||||||||
WBAntibody00000854 | ||||||||||
WBAntibody00000855 | ||||||||||
WBAntibody00000856 | ||||||||||
WBAntibody00000857 | ||||||||||
WBAntibody00000858 | ||||||||||
Microarray_results | 171867_x_at | |||||||||
172922_x_at | ||||||||||
172925_x_at | ||||||||||
172927_x_at | ||||||||||
Expression_cluster (74) | ||||||||||
Interaction | WBInteraction000580181 | |||||||||
Map_info | Map | IV | Position | 1.58914 | Error | 8.8e-05 | ||||
Positive | Positive_clone | ZK354 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Reference | WBPaper00015440 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |