WormBase Tree Display for Gene: WBGene00003435
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WBGene00003435 | SMap | S_parent | Sequence | C33F10 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | msp | ||||||
Allele (11) | |||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-3 cluster. [Ward et al. (1988); BA] | ||||||
Strain | WBStrain00051002 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (13) | |||||||
Paralog (52) | |||||||
Structured_description | Concise_description | msp-40 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||
WBPaper00002143 | |||||||
WBPaper00004591 | |||||||
WBPaper00005670 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||
Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C33F10.9 | |||||
Corresponding_transcript | C33F10.9.1 | ||||||
Other_sequence | MI05833 | ||||||
EV850223.1 | |||||||
GW407225.1 | |||||||
BE588197.1 | |||||||
MIC05147_1 | |||||||
DA00415 | |||||||
DVC01420_1 | |||||||
BMC03962_1 | |||||||
CJC04090_2 | |||||||
CR02945 | |||||||
Associated_feature | WBsf221184 | ||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr3417 | ||||||
Expr1010325 | |||||||
Expr1145800 | |||||||
Expr2013776 | |||||||
Expr2032015 | |||||||
Drives_construct | WBCnstr00036118 | ||||||
Construct_product | WBCnstr00036118 | ||||||
Antibody | WBAntibody00000037 | ||||||
WBAntibody00000038 | |||||||
WBAntibody00000854 | |||||||
WBAntibody00000855 | |||||||
WBAntibody00000856 | |||||||
WBAntibody00000857 | |||||||
WBAntibody00000858 | |||||||
Microarray_results (14) | |||||||
Expression_cluster (231) | |||||||
Interaction (226) | |||||||
Map_info | Map | II | Position | -3.01029 | Error | 0.003527 | |
Positive | Positive_clone | C33F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00001023 | ||||||
WBPaper00015440 | |||||||
WBPaper00024312 | |||||||
WBPaper00025088 | |||||||
WBPaper00041549 | |||||||
WBPaper00057218 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |