WormBase Tree Display for Gene: WBGene00003429
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WBGene00003429 | SMap | S_parent | Sequence | R05F9 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | msp | ||||||
Allele | WBVar01499702 | ||||||
WBVar01498435 | |||||||
WBVar00365083 | |||||||
WBVar00365084 | |||||||
WBVar00728877 | |||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-152 cluster. [Ward et al. (1988); BA] | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00138554 | Caenorhabditis japonica | From_analysis | TreeFam | |||
WBGene00055436 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00177110 | Caenorhabditis japonica | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
CBOVI.g6681 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||
CSP21.g14718 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||
CSP28.g19236 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
CSP28.g4187 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
CSP28.g4198 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
Pan_g8411 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||
WBGene00294468 | Trichuris muris | From_analysis | WormBase-Compara | ||||
Paralog (49) | |||||||
Structured_description | Concise_description | msp-31 encodes a member of the major sperm protein family; msp-31 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); expression is enriched in sperm. | Paper_evidence | WBPaper00004280 | |||
WBPaper00004349 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson324 | |||||||
Date_last_updated | 06 May 2005 00:00:00 | ||||||
Automated_description | Expressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | R05F9.13 | |||||
Corresponding_transcript | R05F9.13.1 | ||||||
Other_sequence (15) | |||||||
Associated_feature | WBsf222975 | ||||||
Experimental_info | RNAi_result (24) | ||||||
Expr_pattern | Expr3417 | ||||||
Expr1031589 | |||||||
Expr1155006 | |||||||
Expr2032009 | |||||||
Drives_construct | WBCnstr00036123 | ||||||
Construct_product | WBCnstr00036123 | ||||||
Antibody | WBAntibody00000037 | ||||||
WBAntibody00000038 | |||||||
WBAntibody00000854 | |||||||
WBAntibody00000855 | |||||||
WBAntibody00000856 | |||||||
WBAntibody00000857 | |||||||
WBAntibody00000858 | |||||||
Microarray_results (23) | |||||||
Expression_cluster (211) | |||||||
Interaction (207) | |||||||
Map_info | Map | II | Position | -2.9184 | Error | 0.003712 | |
Positive | Positive_clone | R05F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00001023 | ||||||
WBPaper00004349 | |||||||
WBPaper00015440 | |||||||
WBPaper00024312 | |||||||
WBPaper00025088 | |||||||
WBPaper00057218 | |||||||
Remark | Map II position -3 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |