WormBase Tree Display for Gene: WBGene00003425
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WBGene00003425 | SMap | S_parent | Sequence | K07F5 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | msp | |||||
Allele (11) | ||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-56 cluster. [Ward et al. (1988); BA] | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00038886 | |||||
00038887 | ||||||
00038888 | ||||||
00038889 | ||||||
00038890 | ||||||
Ortholog (92) | ||||||
Paralog (50) | ||||||
Structured_description | Concise_description | msp-10 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | ||
WBPaper00002143 | ||||||
WBPaper00004591 | ||||||
WBPaper00005670 | ||||||
Curator_confirmed | WBPerson324 | |||||
Date_last_updated | 31 Mar 2005 00:00:00 | |||||
Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | K07F5.2 | ||||
Corresponding_transcript | K07F5.2.1 | |||||
Other_sequence (90) | ||||||
Associated_feature (3) | ||||||
Experimental_info | RNAi_result (21) | |||||
Expr_pattern | Expr3417 | |||||
Expr1153883 | ||||||
Drives_construct | WBCnstr00036125 | |||||
Construct_product | WBCnstr00036125 | |||||
Antibody | WBAntibody00000037 | |||||
WBAntibody00000038 | ||||||
WBAntibody00000854 | ||||||
WBAntibody00000855 | ||||||
WBAntibody00000856 | ||||||
WBAntibody00000857 | ||||||
WBAntibody00000858 | ||||||
Microarray_results | SMD_K07F5.2 | |||||
A_12_P100801 | ||||||
Aff_K07F5.2 | ||||||
Expression_cluster (191) | ||||||
Interaction (190) | ||||||
Map_info | Map | IV | Position | 4.43098 | ||
Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00001023 | |||||
WBPaper00001024 | ||||||
WBPaper00021018 | ||||||
WBPaper00024312 | ||||||
WBPaper00040308 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |