WormBase Tree Display for Gene: WBGene00003346
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| WBGene00003346 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W02B12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-252 | Person_evidence | WBPerson18 | |||||
| Sequence_name | W02B12.14 | ||||||||
| Molecular_name | W02B12.14 | ||||||||
| W02B12.14a | |||||||||
| W02B12.14b | |||||||||
| Other_name | cel-mir-252 | Remark | miRBase V21 import | ||||||
| Cel-Mir-252-P1 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_W02B12.14 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-252 | ||||||||
| DB_info | Database | miRBase | acc | MI0000328 | |||||
| SignaLink | mirna | cel-mir-252 | |||||||
| MirGeneDB | cel | Cel-Mir-252-P1 | |||||||
| NDB | locus_tag | CELE_W02B12.14 | |||||||
| NCBI | gene | 3565840 | |||||||
| RefSeq | protein | NR_002366.2 | |||||||
| RNAcentral | URSid | URS0000184C12 | |||||||
| URS000033AD3A | |||||||||
| URS00005914E5 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498604 | |||||||||
| WBVar01498613 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00090866 | |||||||||
| WBVar01498941 | |||||||||
| Strain | WBStrain00027545 | ||||||||
| WBStrain00027550 | |||||||||
| In_cluster | MIR-252 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-252 encodes a microRNA, a small non-protein coding RNA and is conserved in the nematode C. brigssae; mir-252 is weakly expressed from the L1 larval stage into the adult stage in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-252 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 25 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including eat-2; alg-1; and alg-2 based on RNA-seq studies. Is affected by Microcystin-LR based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | W02B12.14 | |||||||
| W02B12.14a | |||||||||
| W02B12.14b | |||||||||
| Associated_feature | WBsf979093 | ||||||||
| Experimental_info | Expr_pattern | Expr2477 | |||||||
| Expr8432 | |||||||||
| Expr10924 | |||||||||
| Drives_construct | WBCnstr00005512 | ||||||||
| WBCnstr00016877 | |||||||||
| Expression_cluster (14) | |||||||||
| Interaction | WBInteraction000504708 | ||||||||
| WBInteraction000542488 | |||||||||
| WBInteraction000542497 | |||||||||
| Map_info | Map | II | Position | 3.46762 | Error | 0.00029 | |||
| Positive | Positive_clone | W02B12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005825 | ||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00033207 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00050386 | |||||||||
| WBPaper00060500 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
