WormBase Tree Display for Gene: WBGene00003331
expand all nodes | collapse all nodes | view schema
| WBGene00003331 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00005825 | |||||||||
| SMap | S_parent | Sequence | K01F9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-238 | Person_evidence | WBPerson18 | |||||
| Sequence_name | K01F9.5 | ||||||||
| Molecular_name | K01F9.5 | ||||||||
| K01F9.5a | |||||||||
| K01F9.5b | |||||||||
| Other_name | cel-mir-238 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_K01F9.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | mir-238 | ||||||||
| DB_info | Database | miRBase | acc | MI0000313 | |||||
| SignaLink | mirna | cel-mir-238 | |||||||
| MirGeneDB | cel | Cel-Mir-238 | |||||||
| NDB | locus_tag | CELE_K01F9.5 | |||||||
| NCBI | gene | 3565806 | |||||||
| RefSeq | protein | NR_002372.2 | |||||||
| RNAcentral | URSid | URS00001C10D1 | |||||||
| URS0000594984 | |||||||||
| URS00005CF08E | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00027415 | ||||||||
| WBStrain00027541 | |||||||||
| In_cluster | MIR-238 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-238 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; based on RNA sequence identity miR-238 is included in the miR-12 family of microRNAs which also includes miR-239.1 and Drosophila miR-12; miR-238 is weakly expressed in the embryo and strongly expressed at all other stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-238 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| WBPaper00005879 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including eat-2; glp-4; and prg-1 based on RNA-seq studies. Is affected by silicon dioxide nanoparticle based on microarray studies. Used to study Parkinson's disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00035654 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Disease_relevance | mir-238 is a small non-protein coding RNA; microRNA expression profiling studies in an elegans transgenic model of Parkinson''s disease, where A53T alpha-synuclein is overexpressed, indicate that elegans mir-238 is differentially expressed. | Homo sapiens | Paper_evidence | WBPaper00035654 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000261 | ||||||||
| Molecular_info | Corresponding_transcript | K01F9.5 | |||||||
| K01F9.5a | |||||||||
| K01F9.5b | |||||||||
| Associated_feature | WBsf979112 | ||||||||
| WBsf993493 | |||||||||
| WBsf1015501 | |||||||||
| Experimental_info | Expr_pattern | Expr2513 | |||||||
| Expr2650 | |||||||||
| Expr8422 | |||||||||
| Expr10919 | |||||||||
| Drives_construct | WBCnstr00005496 | ||||||||
| WBCnstr00016913 | |||||||||
| Expression_cluster (45) | |||||||||
| Interaction | WBInteraction000504703 | ||||||||
| WBInteraction000542488 | |||||||||
| Map_info | Map | III | Position | -0.038171 | Error | 0.003721 | |||
| Positive | Positive_clone | K01F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4763 | |||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
