WormBase Tree Display for Gene: WBGene00003307
expand all nodes | collapse all nodes | view schema
WBGene00003307 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C12C8 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-79 | Person_evidence | WBPerson18 | |||||
Sequence_name | C12C8.4 | ||||||||
Molecular_name | C12C8.4 | ||||||||
C12C8.4a | |||||||||
C12C8.4b | |||||||||
Other_name | cel-mir-79 | Remark | miRBase V21 import | ||||||
Cel-Mir-9-P18 | Remark | MirGeneDB 2.1 import | |||||||
CELE_C12C8.4 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | mir-79 | ||||||||
DB_info | Database | miRBase | acc | MI0000050 | |||||
SignaLink | mirna | cel-mir-79 | |||||||
MirGeneDB | cel | Cel-Mir-9-P18 | |||||||
NDB | locus_tag | CELE_C12C8.4 | |||||||
NCBI | gene | 259856 | |||||||
RefSeq | protein | NR_000169.2 | |||||||
RNAcentral | URSid | URS0000240AA6 | |||||||
URS00002F68B9 | |||||||||
URS0000482B26 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01500105 | ||||||||
WBVar01499739 | |||||||||
WBVar00660255 | |||||||||
WBVar01499786 | |||||||||
WBVar01499054 | |||||||||
WBVar00090808 | |||||||||
WBVar01498959 | |||||||||
Strain | WBStrain00027447 | ||||||||
WBStrain00027459 | |||||||||
In_cluster | MIR-9 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-79 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-79 is strongly expressed at all developmental stages in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-79 is unknown. | Paper_evidence | WBPaper00004927 | |||||
WBPaper00005825 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
Automated_description | Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | C12C8.4 | |||||||
C12C8.4a | |||||||||
C12C8.4b | |||||||||
Other_sequence | AJ487602 | ||||||||
Associated_feature | WBsf979091 | ||||||||
WBsf984652 | |||||||||
Experimental_info | Expr_pattern | Expr2497 | |||||||
Expr8473 | |||||||||
Expr10918 | |||||||||
Expr11269 | |||||||||
Drives_construct (3) | |||||||||
Expression_cluster (28) | |||||||||
Interaction | WBInteraction000520689 | ||||||||
WBInteraction000520690 | |||||||||
Map_info | Map | I | Position | 3.74935 | Error | 0.001346 | |||
Positive | Positive_clone | C12C8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |