WormBase Tree Display for Gene: WBGene00003275
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WBGene00003275 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K02B9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-47 | Person_evidence | WBPerson18 | |||||
Sequence_name | K02B9.5 | ||||||||
Molecular_name | K02B9.5 | ||||||||
K02B9.5a | |||||||||
K02B9.5b | |||||||||
Other_name | cel-mir-47 | Remark | miRBase V21 import | ||||||
Cel-Mir-281-P4 | Remark | MirGeneDB 2.1 import | |||||||
CELE_K02B9.5 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | mir-47 | ||||||||
DB_info | Database | miRBase | acc | MI0000018 | |||||
SignaLink | mirna | cel-mir-47 | |||||||
MirGeneDB | cel | Cel-Mir-281-P4 | |||||||
NDB | locus_tag | CELE_K02B9.5 | |||||||
NCBI | gene | 259946 | |||||||
RefSeq | protein | NR_001268.2 | |||||||
RNAcentral | URSid | URS0000181F65 | |||||||
URS00003975CA | |||||||||
URS00004DA4E6 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01499887 | ||||||||
WBVar01499519 | |||||||||
WBVar01499888 | |||||||||
WBVar01499710 | |||||||||
WBVar00145574 | |||||||||
WBVar01498960 | |||||||||
WBVar01500067 | |||||||||
Strain | WBStrain00027501 | ||||||||
WBStrain00035682 | |||||||||
WBStrain00051621 | |||||||||
In_cluster | MIR-281 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-47 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-47 is expressed constitutively throughout development; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-47 is not known. | Paper_evidence | WBPaper00004927 | |||||
WBPaper00005825 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 18 Jan 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including hsf-1; eat-2; and prg-1 based on RNA-seq studies. Is affected by four chemicals including nicotine; multi-walled carbon nanotube; and Microcystin-LR based on quantitative PCR; RNA-seq; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | K02B9.5 | |||||||
K02B9.5a | |||||||||
K02B9.5b | |||||||||
Other_sequence | AJ487571 | ||||||||
Associated_feature | WBsf979136 | ||||||||
Experimental_info | Expr_pattern | Expr2480 | |||||||
Expr8454 | |||||||||
Drives_construct | WBCnstr00005509 | ||||||||
WBCnstr00016905 | |||||||||
Construct_product | WBCnstr00042629 | ||||||||
Expression_cluster (26) | |||||||||
Interaction | WBInteraction000504653 | ||||||||
WBInteraction000541192 | |||||||||
WBInteraction000541265 | |||||||||
WBInteraction000542162 | |||||||||
WBInteraction000544770 | |||||||||
Map_info | Map | X | Position | 15.2411 | Error | 0.041431 | |||
Positive | Positive_clone | K02B9 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4961 | |||||||
4285 | |||||||||
4827 | |||||||||
4859 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004927 | ||||||||
WBPaper00005825 | |||||||||
WBPaper00005879 | |||||||||
WBPaper00005932 | |||||||||
WBPaper00031031 | |||||||||
WBPaper00031335 | |||||||||
WBPaper00032329 | |||||||||
WBPaper00035664 | |||||||||
WBPaper00061786 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |