WormBase Tree Display for Gene: WBGene00003093
expand all nodes | collapse all nodes | view schema
WBGene00003093 | SMap | S_parent | Sequence | F58B3 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | lys | |||||
Allele (34) | ||||||
Strain (2) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00069770 | |||||
00069771 | ||||||
00069772 | ||||||
00069773 | ||||||
00110569 | ||||||
00110570 | ||||||
00110571 | ||||||
Ortholog (46) | ||||||
Paralog (9) | ||||||
Structured_description | Automated_description | Predicted to enable lysozyme activity. Involved in defense response to Gram-positive bacterium. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F58B3.1 | ||||
Corresponding_transcript | F58B3.1.1 | |||||
Other_sequence (25) | ||||||
Associated_feature | WBsf652233 | |||||
WBsf668351 | ||||||
WBsf718198 | ||||||
WBsf997893 | ||||||
WBsf230899 | ||||||
Experimental_info | RNAi_result | WBRNAi00075954 | Inferred_automatically | RNAi_primary | ||
WBRNAi00033070 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00048947 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00015941 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Chronogram582 | |||||
Expr1025658 | ||||||
Expr1152684 | ||||||
Expr2013315 | ||||||
Expr2031546 | ||||||
Drives_construct | WBCnstr00002718 | |||||
WBCnstr00036235 | ||||||
Construct_product | WBCnstr00036235 | |||||
Microarray_results (21) | ||||||
Expression_cluster (414) | ||||||
Interaction (108) | ||||||
Map_info | Map | IV | Position | 5.07601 | ||
Positive | Positive_clone | F58B3 | Inferred_automatically | From CDS info | ||
From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||
Reference | WBPaper00005382 | |||||
WBPaper00006437 | ||||||
WBPaper00024209 | ||||||
WBPaper00031802 | ||||||
WBPaper00034591 | ||||||
WBPaper00039111 | ||||||
WBPaper00040135 | ||||||
WBPaper00065026 | ||||||
WBPaper00065988 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
[140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | ||||||
Method | Gene |