WormBase Tree Display for Gene: WBGene00003091
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WBGene00003091 | SMap | S_parent | Sequence | Y22F5A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lys | ||||||
Allele (19) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (31) | |||||||
Paralog (9) | |||||||
Structured_description | Concise_description | lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function. | Paper_evidence | WBPaper00005382 | |||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 23 Sep 2004 00:00:00 | ||||||
Automated_description | Predicted to enable lysozyme activity. Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and innate immune response. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y22F5A.5 | |||||
Corresponding_transcript | Y22F5A.5.1 | ||||||
Other_sequence (135) | |||||||
Associated_feature | WBsf034362 | ||||||
WBsf652976 | |||||||
WBsf652977 | |||||||
WBsf652978 | |||||||
WBsf234363 | |||||||
Experimental_info | RNAi_result (8) | ||||||
Expr_pattern | Expr1013427 | ||||||
Expr1159218 | |||||||
Expr2013313 | |||||||
Expr2031544 | |||||||
Drives_construct | WBCnstr00009963 | ||||||
WBCnstr00036237 | |||||||
Construct_product | WBCnstr00009963 | ||||||
WBCnstr00036237 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (389) | |||||||
Interaction (99) | |||||||
WBProcess | WBbiopr:00000039 | ||||||
WBbiopr:00000092 | |||||||
Map_info | Map | V | Position | 2.45157 | Error | 0.000856 | |
Positive | Positive_clone | Y22F5A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (24) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |