WormBase Tree Display for Gene: WBGene00003084

WBGene00003084 Evidence: Paper_evidence: WBPaper00006348
  SMap: S_parent: Sequence: R160
  Identity: Version: 1
    Name: CGC_name: lst-2 Person_evidence: WBPerson220
      Sequence_name: R160.7
      Molecular_name: R160.7
        R160.7.1
        CE33815
      Other_name: CELE_R160.7 Accession_evidence: NDB BX284606
      Public_name: lst-2
    DB_info: Database: AceView gene XE998
        WormQTL gene WBGene00003084
        WormFlux gene WBGene00003084
        NDB locus_tag CELE_R160.7
        Panther gene CAEEL|WormBase=WBGene00003084|UniProtKB=Q9TZD0
          family PTHR46465
        NCBI gene 180712
        RefSeq protein NM_076355.6
        SwissProt UniProtAcc Q9TZD0
        TREEFAM TREEFAM_ID TF320752
        UniProt_GCRP UniProtAcc Q9TZD0
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lst
    Allele (80)
    RNASeq_FPKM (74)
    GO_annotation: 00097975
      00097976
      00097977
      00110564
    Ortholog (34)
    Paralog: WBGene00000101 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00014019 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be located in early endosome membrane. Is an ortholog of human ZFYVE28 (zinc finger FYVE-type containing 28). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R160.7
    Corresponding_CDS_history: R160.7:wp98
    Corresponding_transcript: R160.7.1
    Other_sequence (50)
    Associated_feature (13)
  Experimental_info: RNAi_result: WBRNAi00017882 Inferred_automatically: RNAi_primary
      WBRNAi00098078 Inferred_automatically: RNAi_primary
      WBRNAi00078913 Inferred_automatically: RNAi_primary
      WBRNAi00051996 Inferred_automatically: RNAi_primary
      WBRNAi00078917 Inferred_automatically: RNAi_primary
      WBRNAi00087646 Inferred_automatically: RNAi_primary
      WBRNAi00034945 Inferred_automatically: RNAi_primary
      WBRNAi00078214 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025306
      Expr1031459
      Expr1155638
      Expr2013297
      Expr2031528
    Drives_construct: WBCnstr00036241
    Construct_product: WBCnstr00036241
    Microarray_results (19)
    Expression_cluster (109)
    Interaction (31)
  Map_info: Map: X Position: -7.76732
    Positive: Positive_clone: R160 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006348
    WBPaper00027225
    WBPaper00027316
    WBPaper00028279
    WBPaper00031805
    WBPaper00033459
    WBPaper00038491
    WBPaper00043616
    WBPaper00050455
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene