WormBase Tree Display for Gene: WBGene00003077
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WBGene00003077 | Evidence | Person_evidence | WBPerson1846 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y62E10A | ||||||
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 4O153 | |||||
WormQTL | gene | WBGene00003077 | |||||||
WormFlux | gene | WBGene00003077 | |||||||
NDB | locus_tag | CELE_Y62E10A.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003077|UniProtKB=Q9U1W8 | |||||||
family | PTHR13110 | ||||||||
NCBI | gene | 178303 | |||||||
RefSeq | protein | NM_001306962.1 | |||||||
NM_070178.7 | |||||||||
TrEMBL | UniProtAcc | A0A061AIX6 | |||||||
Q9U1W8 | |||||||||
UniProt_GCRP | UniProtAcc | Q9U1W8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lsm | ||||||||
Allele (46) | |||||||||
Strain | WBStrain00033284 | ||||||||
WBStrain00004795 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (25) | |||||||||
Contained_in_operon | CEOP4548 | ||||||||
Ortholog (35) | |||||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and mRNA splicing, via spliceosome. Located in P-body. Is an ortholog of human LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00083666 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117313 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117304 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083850 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00057844 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094393 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021220 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117293 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024012 | ||||||||
Expr1031452 | |||||||||
Expr1161277 | |||||||||
Expr2013290 | |||||||||
Expr2031521 | |||||||||
Drives_construct | WBCnstr00036246 | ||||||||
Construct_product | WBCnstr00036246 | ||||||||
Microarray_results (34) | |||||||||
Expression_cluster (86) | |||||||||
SAGE_tag | SAGE:gttttatcgg | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:gttttatcggaggttga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ttcaaatgtt | Strand | Antisense | |||||||
SAGE:ttcaaatgttgatcgaa | Strand | Antisense | |||||||
Interaction (112) | |||||||||
Map_info | Map | IV | Position | 8.87458 | Error | 0.008632 | |||
Positive | Positive_clone | Y62E10A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00032091 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00046572 | |||||||||
WBPaper00047010 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |