WormBase Tree Display for Gene: WBGene00002889
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WBGene00002889 | SMap | S_parent | Sequence | F20H11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | let-765 | Paper_evidence | WBPaper00036029 | |||||
Person_evidence | WBPerson533 | ||||||||
Sequence_name | F20H11.2 | ||||||||
Molecular_name | F20H11.2 | ||||||||
F20H11.2.1 | |||||||||
CE45139 | |||||||||
Other_name | let-745 | ||||||||
nsh-1 | Person_evidence | WBPerson625 | |||||||
CELE_F20H11.2 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | let-765 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00002889 | |||||
WormFlux | gene | WBGene00002889 | |||||||
NDB | locus_tag | CELE_F20H11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002889|UniProtKB=O01737 | |||||||
family | PTHR12706 | ||||||||
NCBI | gene | 175934 | |||||||
RefSeq | protein | NM_066054.6 | |||||||
SwissProt | UniProtAcc | O01737 | |||||||
TREEFAM | TREEFAM_ID | TF313526 | |||||||
UniProt_GCRP | UniProtAcc | O01737 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:29 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 09 Apr 2010 13:43:20 | WBPerson2970 | Event | Acquires_merge | WBGene00003819 | ||||
Name_change | Other_name | nsh-1 | |||||||
3 | 24 Jun 2010 13:32:00 | WBPerson1867 | Event | Acquires_merge | WBGene00017649 | ||||
Acquires_merge | WBGene00003819 | ||||||||
WBGene00017649 | |||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | let | ||||||||
Allele (96) | |||||||||
Legacy_information | [Stewart HI] homozygotes arrest at early larval stage | ||||||||
[Stewart HI] homozygotes arrest at mid larval stage | |||||||||
[C.elegansII] s2575 : early larval lethal, L2 arrest with lineage abnormalities; in males, B.a and B.p equal in size. s2575/Dfarrests at L1. OA1: s2630 (pka let-745, midlarval lethal). [BC] | |||||||||
Strain | WBStrain00003530 | ||||||||
WBStrain00036743 | |||||||||
WBStrain00000813 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Contained_in_operon | CEOP3392 | ||||||||
Ortholog (45) | |||||||||
Structured_description | Automated_description | Predicted to enable chromatin DNA binding activity and histone binding activity. Involved in several processes, including nematode male tail tip morphogenesis; positive regulation of Ras protein signal transduction; and vulval cell fate specification. Located in nucleus. Expressed in several structures, including P3.pa; P3.pp; P4.pa; P5.ppp; and P7.paa. Is an ortholog of human SBNO1 (strawberry notch homolog 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F20H11.2 | |||||||
Corresponding_CDS_history | F20H11.2:wp216 | ||||||||
Corresponding_transcript | F20H11.2.1 | ||||||||
Other_sequence (50) | |||||||||
Associated_feature (20) | |||||||||
Experimental_info | RNAi_result (46) | ||||||||
Expr_pattern | Chronogram822 | ||||||||
Expr9006 | |||||||||
Expr9007 | |||||||||
Expr1031370 | |||||||||
Expr1149090 | |||||||||
Expr2013076 | |||||||||
Expr2031308 | |||||||||
Drives_construct | WBCnstr00004594 | ||||||||
WBCnstr00005998 | |||||||||
WBCnstr00008396 | |||||||||
Construct_product | WBCnstr00005998 | ||||||||
WBCnstr00008397 | |||||||||
Microarray_results (35) | |||||||||
Expression_cluster (89) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | III | Position | -1.06077 | Error | 0.002588 | |||
Positive | Inside_rearr | sDf125 | |||||||
sDp3 | |||||||||
sDp8 | |||||||||
Positive_clone | F20H11 | Inferred_automatically | From CDS info | ||||||
From sequence, transcript, pseudogene data | |||||||||
Negative | Outside_rearr | sDf121 | |||||||
sDf135 | |||||||||
Mapping_data | Multi_point | 3297 | |||||||
3298 | |||||||||
3299 | |||||||||
3300 | |||||||||
3301 | |||||||||
3302 | |||||||||
3332 | |||||||||
Pos_neg_data | 8679 | ||||||||
8769 | |||||||||
8785 | |||||||||
8794 | |||||||||
9250 | |||||||||
9251 | |||||||||
9252 | |||||||||
9253 | |||||||||
Reference (11) | |||||||||
Remark | RENAMED LET-745 TO LET-765. | ||||||||
Moved from -0.995 [sdm/jah 5/99] | |||||||||
Method | Gene |