WormBase Tree Display for Gene: WBGene00001972
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WBGene00001972 | SMap | S_parent | Sequence | F47D12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hmg | ||||||
Allele (28) | |||||||
Strain | WBStrain00001623 | ||||||
WBStrain00030872 | |||||||
WBStrain00030873 | |||||||
WBStrain00030879 | |||||||
WBStrain00036586 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (14) | |||||||
Ortholog (61) | |||||||
Paralog (5) | |||||||
Structured_description | Automated_description | Enables transcription cis-regulatory region binding activity. Involved in several processes, including gonad development; positive regulation of transcription by RNA polymerase II; and vulval development. Located in nucleus. Expressed in several structures, including tail. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; cerebral infarction; and syndromic microphthalmia 13. Is an ortholog of human HMGB3 (high mobility group box 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||
DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
DOID:0111811 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5004) | ||||
DOID:3526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
DOID:13378 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
DOID:418 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
Molecular_info | Corresponding_CDS | F47D12.4a | |||||
F47D12.4b | |||||||
F47D12.4c | |||||||
Corresponding_transcript | F47D12.4a.1 | ||||||
F47D12.4b.1 | |||||||
F47D12.4c.1 | |||||||
Other_sequence (117) | |||||||
Associated_feature (13) | |||||||
Transcription_factor | WBTranscriptionFactor000385 | ||||||
Experimental_info | RNAi_result (45) | ||||||
Expr_pattern (12) | |||||||
Drives_construct | WBCnstr00002462 | ||||||
WBCnstr00002481 | |||||||
WBCnstr00003263 | |||||||
WBCnstr00012419 | |||||||
WBCnstr00015261 | |||||||
WBCnstr00017071 | |||||||
WBCnstr00019876 | |||||||
WBCnstr00036551 | |||||||
Construct_product | WBCnstr00012419 | ||||||
WBCnstr00019997 | |||||||
WBCnstr00019999 | |||||||
WBCnstr00036551 | |||||||
Microarray_results (34) | |||||||
Expression_cluster (166) | |||||||
Interaction (312) | |||||||
WBProcess | WBbiopr:00000071 | ||||||
WBbiopr:00000072 | |||||||
Map_info | Map | III | Position | -1.40577 | Error | 0.000741 | |
Positive | Positive_clone | F47D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4334 | |||||
4407 | |||||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |