WormBase Tree Display for Gene: WBGene00001971
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| WBGene00001971 | SMap | S_parent | Sequence | Y48B6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hmg-1.1 | |||||||
| Sequence_name | Y48B6A.14 | ||||||||
| Molecular_name | Y48B6A.14 | ||||||||
| Y48B6A.14.1 | |||||||||
| CE29377 | |||||||||
| Other_name | CELE_Y48B6A.14 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | hmg-1.1 | ||||||||
| DB_info | Database | AceView | gene | 2O541 | |||||
| WormQTL | gene | WBGene00001971 | |||||||
| SignaLink | protein | WBGene00001971 | |||||||
| WormFlux | gene | WBGene00001971 | |||||||
| NDB | locus_tag | CELE_Y48B6A.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001971|UniProtKB=G5EFV4 | |||||||
| family | PTHR48112 | ||||||||
| NCBI | gene | 175081 | |||||||
| RefSeq | protein | NM_001383989.2 | |||||||
| TrEMBL | UniProtAcc | G5EFV4 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFV4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmg | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018891 | ||||||||
| 00018892 | |||||||||
| 00018893 | |||||||||
| 00018894 | |||||||||
| 00018895 | |||||||||
| 00018896 | |||||||||
| 00018897 | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | hmg-1.1 encodes a member of the high mobility group (HMG) family of proteins. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable transcription cis-regulatory region binding activity. Predicted to be located in nucleus. Expressed in head neurons; pharynx; tail neurons; ventral nerve cord; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48B6A.14 | |||||||
| Corresponding_CDS_history | Y48B6A.14:wp63 | ||||||||
| Corresponding_transcript | Y48B6A.14.1 | ||||||||
| Other_sequence (224) | |||||||||
| Associated_feature (19) | |||||||||
| Transcription_factor | WBTranscriptionFactor000300 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00027840 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001121 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020734 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056879 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3945 | ||||||||
| Expr7720 | |||||||||
| Expr1018982 | |||||||||
| Expr1031141 | |||||||||
| Expr1160331 | |||||||||
| Expr2012515 | |||||||||
| Expr2030754 | |||||||||
| Drives_construct | WBCnstr00011769 | ||||||||
| WBCnstr00012865 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (215) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | II | Position | 22.8989 | Error | 0.001866 | |||
| Positive | Positive_clone | Y48B6A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4938 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026935 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040135 | |||||||||
| WBPaper00042117 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequece connection on the basis of AF056576 [020930 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
