WormBase Tree Display for Gene: WBGene00001731
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| WBGene00001731 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W03A5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-22 | Person_evidence | WBPerson83 | |||||
| Sequence_name | W03A5.3 | ||||||||
| Molecular_name | W03A5.3 | ||||||||
| W03A5.3.1 | |||||||||
| CE21252 | |||||||||
| Other_name | CELE_W03A5.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | grl-22 | ||||||||
| DB_info | Database | AceView | gene | 3G502 | |||||
| WormQTL | gene | WBGene00001731 | |||||||
| WormFlux | gene | WBGene00001731 | |||||||
| NDB | locus_tag | CELE_W03A5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001731|UniProtKB=Q23137 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 189140 | |||||||
| RefSeq | protein | NM_065753.3 | |||||||
| TREEFAM | TREEFAM_ID | TF317463 | |||||||
| TrEMBL | UniProtAcc | Q23137 | |||||||
| UniProt_GCRP | UniProtAcc | Q23137 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00037161 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-22 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in Cappppv; Cpppppv; hypodermis; and tail hypodermis based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W03A5.3 | |||||||
| Corresponding_transcript | W03A5.3.1 | ||||||||
| Other_sequence | PSC00403 | ||||||||
| SRC02248_1 | |||||||||
| Tcir_isotig09149 | |||||||||
| BXC05113_1 | |||||||||
| GW412397.1 | |||||||||
| Acan_isotig17637 | |||||||||
| Associated_feature | WBsf717899 | ||||||||
| WBsf992374 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036212 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00068241 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019532 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005249 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054645 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025863 | ||||||||
| Expr1158191 | |||||||||
| Expr2012257 | |||||||||
| Expr2030493 | |||||||||
| Drives_construct | WBCnstr00036731 | ||||||||
| Construct_product | WBCnstr00036731 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | III | Position | -1.7465 | Error | 0.009521 | |||
| Positive | Positive_clone | W03A5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00028984 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00061133 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
