WormBase Tree Display for Gene: WBGene00001717
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| WBGene00001717 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZC487 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-8 | Person_evidence | WBPerson83 | |||||
| Sequence_name | ZC487.5 | ||||||||
| Molecular_name | ZC487.5 | ||||||||
| ZC487.5.1 | |||||||||
| CE07607 | |||||||||
| Other_name | CELE_ZC487.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-8 | ||||||||
| DB_info | Database | AceView | gene | 5H212 | |||||
| WormQTL | gene | WBGene00001717 | |||||||
| WormFlux | gene | WBGene00001717 | |||||||
| NDB | locus_tag | CELE_ZC487.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001717|UniProtKB=Q23353 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 191191 | |||||||
| RefSeq | protein | NM_072306.2 | |||||||
| TREEFAM | TREEFAM_ID | TF317419 | |||||||
| TrEMBL | UniProtAcc | Q23353 | |||||||
| UniProt_GCRP | UniProtAcc | Q23353 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00003429 | ||||||||
| WBStrain00032806 | |||||||||
| WBStrain00037179 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-8 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground-like (Grl) domain; the Grl domain ispredicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in rectal epithelium. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC487.5 | |||||||
| Corresponding_transcript | ZC487.5.1 | ||||||||
| Associated_feature | WBsf717231 | ||||||||
| WBsf1000345 | |||||||||
| WBsf1000346 | |||||||||
| WBsf1019850 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058975 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021731 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4448 | ||||||||
| Expr7171 | |||||||||
| Expr1024293 | |||||||||
| Expr1162410 | |||||||||
| Expr2012273 | |||||||||
| Expr2030509 | |||||||||
| Drives_construct | WBCnstr00003893 | ||||||||
| WBCnstr00012012 | |||||||||
| WBCnstr00036743 | |||||||||
| Construct_product | WBCnstr00036743 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (64) | |||||||||
| Interaction | WBInteraction000290613 | ||||||||
| WBInteraction000300751 | |||||||||
| WBInteraction000306480 | |||||||||
| WBInteraction000397105 | |||||||||
| WBInteraction000398154 | |||||||||
| WBInteraction000451157 | |||||||||
| Map_info | Map | V | Position | 0.135916 | Error | 0.000262 | |||
| Positive | Positive_clone | ZC487 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00063946 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
