WormBase Tree Display for Gene: WBGene00001714
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WBGene00001714 | Evidence | Paper_evidence | WBPaper00003717 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y47D7A | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | grl | ||||||
Allele (53) | |||||||
Strain | WBStrain00032702 | ||||||
WBStrain00032726 | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (26) | |||||||
Paralog (32) | |||||||
Structured_description | Concise_description | grl-5 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||
WBPaper00026841 | |||||||
WBPaper00027263 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||
Automated_description | Expressed in hypodermal cell; hypodermis; rectal epithelium; and ventral cord blast cell. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y47D7A.5 | |||||
Corresponding_transcript | Y47D7A.5.1 | ||||||
Other_sequence (40) | |||||||
Associated_feature | WBsf652572 | ||||||
WBsf999783 | |||||||
WBsf233580 | |||||||
WBsf233581 | |||||||
Experimental_info | RNAi_result | WBRNAi00037176 | Inferred_automatically | RNAi_primary | |||
WBRNAi00020714 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056786 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr4444 | ||||||
Expr15720 | |||||||
Expr16251 | |||||||
Expr1014445 | |||||||
Expr1031026 | |||||||
Expr1160243 | |||||||
Expr2012270 | |||||||
Expr2030506 | |||||||
Drives_construct | WBCnstr00012008 | ||||||
WBCnstr00036746 | |||||||
WBCnstr00042493 | |||||||
Construct_product | WBCnstr00036746 | ||||||
WBCnstr00042493 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (269) | |||||||
Interaction | WBInteraction000548809 | ||||||
Map_info | Map | V | Position | -5.5777 | Error | 0.031179 | |
Positive | Positive_clone | Y47D7A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00028754 | ||||||
WBPaper00031588 | |||||||
WBPaper00058700 | |||||||
WBPaper00064105 | |||||||
Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |