WormBase Tree Display for Gene: WBGene00001660
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| WBGene00001660 | SMap | S_parent | Sequence | C34E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gop-1 | Person_evidence | WBPerson247 | |||||
| Sequence_name | C34E10.3 | ||||||||
| Molecular_name | C34E10.3 | ||||||||
| C34E10.3.1 | |||||||||
| CE01183 | |||||||||
| Other_name | CELE_C34E10.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | gop-1 | ||||||||
| DB_info | Database | AceView | gene | 3G347 | |||||
| WormQTL | gene | WBGene00001660 | |||||||
| WormFlux | gene | WBGene00001660 | |||||||
| NDB | locus_tag | CELE_C34E10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001660|UniProtKB=P46578 | |||||||
| family | PTHR21481 | ||||||||
| NCBI | gene | 175721 | |||||||
| RefSeq | protein | NM_065716.7 | |||||||
| SwissProt | UniProtAcc | P46578 | |||||||
| TREEFAM | TREEFAM_ID | TF314293 | |||||||
| UniProt_GCRP | UniProtAcc | P46578 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gop | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00037810 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00046506 | ||||||||
| 00046507 | |||||||||
| 00046508 | |||||||||
| 00046509 | |||||||||
| 00046510 | |||||||||
| 00046511 | |||||||||
| Contained_in_operon | CEOP3272 | ||||||||
| Ortholog (43) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in endosomal transport; endosome to lysosome transport; and regulation of autophagosome maturation. Predicted to be located in endolysosome membrane and late endosome. Expressed in coelomocyte; intestinal cell; non-striated muscle; and somatic nervous system. Human ortholog(s) of this gene implicated in Addison's disease and autoimmune disease (multiple). Is an ortholog of human CLEC16A (C-type lectin domain containing 16A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9744 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29013) | ||||
| DOID:7148 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29013) | ||||||
| DOID:13774 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29013) | ||||||
| DOID:2377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29013) | ||||||
| Molecular_info | Corresponding_CDS | C34E10.3 | |||||||
| Corresponding_transcript | C34E10.3.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf645157 | ||||||||
| WBsf658921 | |||||||||
| WBsf658922 | |||||||||
| WBsf992346 | |||||||||
| WBsf1014861 | |||||||||
| WBsf224892 | |||||||||
| WBsf224893 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011604 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005515 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091106 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041890 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029526 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13349 | ||||||||
| Expr13350 | |||||||||
| Expr1021284 | |||||||||
| Expr1030993 | |||||||||
| Expr1145900 | |||||||||
| Expr2012173 | |||||||||
| Expr2030409 | |||||||||
| Drives_construct | WBCnstr00036795 | ||||||||
| WBCnstr00039345 | |||||||||
| WBCnstr00039346 | |||||||||
| Construct_product | WBCnstr00036795 | ||||||||
| WBCnstr00038699 | |||||||||
| WBCnstr00039346 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (69) | |||||||||
| Interaction | WBInteraction000392519 | ||||||||
| WBInteraction000411510 | |||||||||
| WBInteraction000425764 | |||||||||
| WBInteraction000522809 | |||||||||
| WBInteraction000539580 | |||||||||
| WBInteraction000556235 | |||||||||
| Map_info | Map | III | Position | -1.85618 | Error | 0.000292 | |||
| Positive | Positive_clone | C34E10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00051130 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Locus created on basis of AY052769 [020823 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
