WormBase Tree Display for Gene: WBGene00001643
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| WBGene00001643 | SMap | S_parent | Sequence | F22D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-18 | Person_evidence | WBPerson228 | |||||
| Sequence_name | F22D6.11 | ||||||||
| Molecular_name | F22D6.11 | ||||||||
| F22D6.11.1 | |||||||||
| CE30759 | |||||||||
| Other_name | CELE_F22D6.11 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | gly-18 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00040602 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065657 | ||||||||
| 00065658 | |||||||||
| 00065659 | |||||||||
| 00065660 | |||||||||
| 00065661 | |||||||||
| 00065662 | |||||||||
| 00109185 | |||||||||
| 00109186 | |||||||||
| Ortholog (62) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | GLY-18 is similar to 2/I N-acetylglucosaminyltransferase. | Paper_evidence | WBPaper00005030 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable glycosyltransferase activity. Predicted to be located in Golgi membrane. Expressed in several structures, including GLR; distal tip cell; enteric muscle; ventral nerve cord; and vm1. Human ortholog(s) of this gene implicated in cataract 13 with adult i phenotype. Is an ortholog of several human genes including GCNT1 (glucosaminyl (N-acetyl) transferase 1); GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type); and GCNT4 (glucosaminyl (N-acetyl) transferase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110242 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4204) | ||||
| DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4204) | ||||||
| Molecular_info | Corresponding_CDS | F22D6.11 | |||||||
| Corresponding_CDS_history | F22D6.11:wp79 | ||||||||
| Corresponding_transcript | F22D6.11.1 | ||||||||
| Other_sequence | JO472169.1 | ||||||||
| Oden_isotig20896 | |||||||||
| FC549174.1 | |||||||||
| Dviv_isotig19207 | |||||||||
| JI479536.1 | |||||||||
| CJC13251_1 | |||||||||
| Dviv_isotig19206 | |||||||||
| ACC01661_1 | |||||||||
| ACC00597_1 | |||||||||
| FC549282.1 | |||||||||
| Associated_feature | WBsf643425 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00114768 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063344 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045312 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003423 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1786 | ||||||||
| Expr13508 | |||||||||
| Expr16068 | |||||||||
| Expr1014563 | |||||||||
| Expr1149236 | |||||||||
| Expr2012138 | |||||||||
| Expr2030374 | |||||||||
| Drives_construct | WBCnstr00010443 | ||||||||
| WBCnstr00019376 | |||||||||
| WBCnstr00036803 | |||||||||
| WBCnstr00038222 | |||||||||
| WBCnstr00039657 | |||||||||
| Construct_product | WBCnstr00036803 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | I | Position | 1.74999 | Error | 0.00366 | |||
| Positive | Positive_clone | F22D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4364 | |||||||
| 4547 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005030 | ||||||||
| WBPaper00005185 | |||||||||
| WBPaper00023337 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
