WormBase Tree Display for Gene: WBGene00001585
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WBGene00001585 | SMap | S_parent | Sequence | M04B2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gfl-1 | Person_evidence | WBPerson206 | |||||
Sequence_name | M04B2.3 | ||||||||
Molecular_name | M04B2.3 | ||||||||
M04B2.3.1 | |||||||||
CE12388 | |||||||||
Other_name | CELE_M04B2.3 | Accession_evidence | NDB | BX284604 | |||||
Public_name | gfl-1 | ||||||||
DB_info | Database | AceView | gene | 4M287 | |||||
WormQTL | gene | WBGene00001585 | |||||||
WormFlux | gene | WBGene00001585 | |||||||
NDB | locus_tag | CELE_M04B2.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001585|UniProtKB=Q21501 | |||||||
family | PTHR23195 | ||||||||
NCBI | gene | 187434 | |||||||
RefSeq | protein | NM_069771.2 | |||||||
TrEMBL | UniProtAcc | Q21501 | |||||||
UniProt_GCRP | UniProtAcc | Q21501 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gfl | ||||||||
Allele (18) | |||||||||
Strain | WBStrain00036024 | ||||||||
WBStrain00036032 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00013692 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | gfl-1 encodes an ortholog of human GLIOMA-AMPLIFIED SEQUENCE-41 (GAS41; OMIM:602116, found in increased copy number in low-grade glioma); loss of GLF-1, which is predicted to associate with chromatin, results in potent suppression of the RNA interference (RNAi) mechanism; GLF-1 is also similar to the transcription factors (yeast and human) AF-9 and human ENL, and thus may represent a novel class of transcription factors. | Paper_evidence | WBPaper00005193 | |||||
WBPaper00013026 | |||||||||
WBPaper00013597 | |||||||||
Curator_confirmed (3) | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable chromatin binding activity and histone binding activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Is an ortholog of human YEATS4 (YEATS domain containing 4). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | M04B2.3 | |||||||
Corresponding_transcript | M04B2.3.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf646382 | ||||||||
WBsf646383 | |||||||||
WBsf976976 | |||||||||
WBsf976977 | |||||||||
WBsf997859 | |||||||||
WBsf997860 | |||||||||
WBsf1018216 | |||||||||
WBsf229164 | |||||||||
Transcription_factor | WBTranscriptionFactor000174 | ||||||||
Experimental_info | RNAi_result (25) | ||||||||
Expr_pattern | Expr1022473 | ||||||||
Expr1030951 | |||||||||
Expr1154583 | |||||||||
Expr2012030 | |||||||||
Expr2030266 | |||||||||
Drives_construct | WBCnstr00036844 | ||||||||
Construct_product | WBCnstr00036844 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (122) | |||||||||
Interaction (87) | |||||||||
Map_info | Map | IV | Position | 4.99219 | Error | 0.001448 | |||
Positive | Positive_clone | M04B2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4863 | |||||||
4832 | |||||||||
4487 | |||||||||
5044 | |||||||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |