WormBase Tree Display for Gene: WBGene00001230

WBGene00001230 Evidence: Person_evidence: WBPerson599
  SMap: S_parent: Sequence: F22B5
  Identity: Version: 1
    Name: CGC_name: eif-3.G
      Sequence_name: F22B5.2
      Molecular_name: F22B5.2a
        F22B5.2a.1
        CE47869
        F22B5.2b
        CE02197
        F22B5.2b.1
      Other_name: CELE_F22B5.2 Accession_evidence: NDB BX284602
      Public_name: eif-3.G
    DB_info: Database: AceView gene 2I733
        WormQTL gene WBGene00001230
        WormFlux gene WBGene00001230
        NDB locus_tag CELE_F22B5.2
        Panther gene CAEEL|WormBase=WBGene00001230|UniProtKB=Q19706
          family PTHR10352
        NCBI gene 174346
        RefSeq protein NM_063377.5
            NM_001276737.3
        SwissProt UniProtAcc Q19706
        UniProt_GCRP UniProtAcc Q19706
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: eif
    Allele (23)
    RNASeq_FPKM (74)
    GO_annotation (23)
    Contained_in_operon: CEOP2344
    Ortholog (44)
    Structured_description: Concise_description: eif-3.G encodes a homolog of eukaryotic translation initiation factor 3, subunit 4 that affects embryonic viability, fertility, and growth. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables mRNA 5'-UTR binding activity. Involved in positive regulation of translation. Located in cytoplasm. Expressed in germ line and somatic cell. Is an ortholog of human EIF3G (eukaryotic translation initiation factor 3 subunit G). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F22B5.2a
      F22B5.2b
    Corresponding_transcript: F22B5.2a.1
      F22B5.2b.1
    Other_sequence (119)
    Associated_feature: WBsf221741
      WBsf221742
  Experimental_info: RNAi_result: WBRNAi00045277 Inferred_automatically: RNAi_primary
      WBRNAi00091063 Inferred_automatically: RNAi_primary
      WBRNAi00025173 Inferred_automatically: RNAi_primary
      WBRNAi00008681 Inferred_automatically: RNAi_primary
      WBRNAi00064364 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4081
      Expr15849
      Expr15850
      Expr1019963
      Expr1030778
      Expr1149207
      Expr2011257
      Expr2029493
    Drives_construct: WBCnstr00037023
      WBCnstr00042560
    Construct_product: WBCnstr00037023
      WBCnstr00042560
    Microarray_results (21)
    Expression_cluster (107)
    SAGE_tag: SAGE:tagattttaa Strand: Antisense
      SAGE:ccgtgtcacc Strand: Sense
        Unambiguously_mapped
      SAGE:tattctcatc Strand: Antisense
      SAGE:taccaattggacgagga Strand: Sense
        Unambiguously_mapped
      SAGE:ccgtgtcaccaatcttc Strand: Sense
        Unambiguously_mapped
      SAGE:taccaattgg Strand: Sense
        Unambiguously_mapped
      SAGE:accttgtaaggacaatg Strand: Antisense
    Interaction (170)
  Map_info: Map: II Position: 0.776238 Error: 0.000486
    Positive: Positive_clone: F22B5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005654
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00061749
    WBPaper00063819
  Remark: The capital letters are used here to distinguish the different eIF3 subunit genes. This roughly agrees with worm gene nomenclature and it makes clear the orthologies for these universal factors (eif-3B corresponding to eIF3b, and so on), in the unified eIF3 nomenclature proposed by Browning KS et al (2001)[JAH][030106 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene