WormBase Tree Display for Gene: WBGene00001117
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| WBGene00001117 | SMap | S_parent | Sequence | F54C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dyf-1 | Person_evidence | WBPerson252 | |||||
| Sequence_name | F54C1.5 | ||||||||
| Molecular_name | F54C1.5a | ||||||||
| F54C1.5a.1 | |||||||||
| CE33108 | |||||||||
| F54C1.5b | |||||||||
| CE33109 | |||||||||
| F54C1.5b.1 | |||||||||
| F54C1.5b.2 | |||||||||
| F54C1.5b.3 | |||||||||
| F54C1.5b.4 | |||||||||
| Other_name | CELE_F54C1.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | dyf-1 | ||||||||
| DB_info | Database | AceView | gene | 1F558 | |||||
| WormQTL | gene | WBGene00001117 | |||||||
| WormFlux | gene | WBGene00001117 | |||||||
| NDB | locus_tag | CELE_F54C1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001117|UniProtKB=Q8I7G4 | |||||||
| family | PTHR20931 | ||||||||
| NCBI | gene | 172122 | |||||||
| RefSeq | protein | NM_059093.7 | |||||||
| NM_182063.7 | |||||||||
| SwissProt | UniProtAcc | Q8I7G4 | |||||||
| TREEFAM | TREEFAM_ID | TF314592 | |||||||
| UniProt_GCRP | UniProtAcc | Q8I7G4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Oct 2005 14:32:56 | WBPerson2970 | Event | Acquires_merge | WBGene00018790 | ||||
| Name_change | Sequence_name | F54C1.5 | |||||||
| Acquires_merge | WBGene00018790 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dyf | ||||||||
| Allele (46) | |||||||||
| Legacy_information | [Herman RK] Defective in dye filling (FITC or DiO) of amphid and phasmid neurons. Chemotaxis defective. ME2 | ||||||||
| [C.elegansII] mn335mut : defective in dye filling (FITC or DiO) of amphid and phasmid neurons. Chemotaxis defective. ME2. [Starich et al. 1995] | |||||||||
| Complementation_data | [Herman RK] dyf-1(mn335) complements dyf-10(e1383) with respect to dye filling. | ||||||||
| Strain | WBStrain00034356 | ||||||||
| WBStrain00036821 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (42) | |||||||||
| Structured_description | Concise_description | dyf-1 encodes a ciliary protein, belonging to a conserved but unfamiliarprotein family, specifically required for the kinesin OSM-3 to dock ontoand move intraflagellar transport (IFT) particles; DYF-1 affectsdevelopment of the amphid and phasmid neurons, chemotaxis, and dauerformation; DYF-1 function is downstream of BBS-8, which is required forIFT particles to stably bind both kinesin-II and OSM-3. | Paper_evidence | WBPaper00002087 | |||||
| WBPaper00003661 | |||||||||
| WBPaper00004405 | |||||||||
| WBPaper00026666 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable intraciliary transport particle B binding activity. Involved in intraciliary transport and protein localization to plasma membrane. Located in axonemal microtubule and ciliary basal body. Expressed in amphid neurons; inner labial neurons; outer labial neurons; and phasmid neurons. Is an ortholog of human IFT70A (intraflagellar transport 70A) and IFT70B (intraflagellar transport 70B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C1.5a | |||||||
| F54C1.5b | |||||||||
| Corresponding_transcript | F54C1.5a.1 | ||||||||
| F54C1.5b.1 | |||||||||
| F54C1.5b.2 | |||||||||
| F54C1.5b.3 | |||||||||
| F54C1.5b.4 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf047479 | ||||||||
| WBsf649130 | |||||||||
| WBsf663796 | |||||||||
| WBsf664183 | |||||||||
| WBsf664184 | |||||||||
| WBsf664185 | |||||||||
| WBsf983569 | |||||||||
| WBsf983570 | |||||||||
| WBsf1009751 | |||||||||
| WBsf219350 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048247 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003766 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3700 | ||||||||
| Expr3731 | |||||||||
| Expr1022891 | |||||||||
| Expr1030713 | |||||||||
| Expr1152052 | |||||||||
| Expr2011132 | |||||||||
| Expr2029368 | |||||||||
| Drives_construct | WBCnstr00011612 | ||||||||
| WBCnstr00011635 | |||||||||
| WBCnstr00020273 | |||||||||
| WBCnstr00020994 | |||||||||
| WBCnstr00037076 | |||||||||
| WBCnstr00042566 | |||||||||
| WBCnstr00042567 | |||||||||
| Construct_product | WBCnstr00011612 | ||||||||
| WBCnstr00037076 | |||||||||
| Regulate_expr_cluster | WBPaper00064565:dyf-1(mn335)_downregulated | ||||||||
| WBPaper00064565:dyf-1(mn335)_regulated_protein | |||||||||
| WBPaper00064565:dyf-1(mn335)_upregulated | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (158) | |||||||||
| Interaction | WBInteraction000257029 | ||||||||
| WBInteraction000503954 | |||||||||
| WBInteraction000542897 | |||||||||
| WBInteraction000542909 | |||||||||
| WBInteraction000560434 | |||||||||
| WBInteraction000560436 | |||||||||
| WBInteraction000560438 | |||||||||
| WBInteraction000579031 | |||||||||
| WBInteraction000579033 | |||||||||
| Map_info | Map | I | Position | -0.429169 | Error | 0.000544 | |||
| Positive | Positive_clone | F54C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3035 | |||||||
| 3036 | |||||||||
| 5501 | |||||||||
| Pos_neg_data | 8297 | ||||||||
| Reference (27) | |||||||||
| Method | Gene |
