WormBase Tree Display for Gene: WBGene00000725
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| WBGene00000725 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F32G8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-152 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F32G8.5 | ||||||||
| Molecular_name | F32G8.5 | ||||||||
| F32G8.5.1 | |||||||||
| CE05794 | |||||||||
| Other_name | CELE_F32G8.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-152 | ||||||||
| DB_info | Database | AceView | gene | 5L41 | |||||
| WormQTL | gene | WBGene00000725 | |||||||
| WormFlux | gene | WBGene00000725 | |||||||
| NDB | locus_tag | CELE_F32G8.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000725|UniProtKB=Q19979 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 185212 | |||||||
| RefSeq | protein | NM_073308.2 | |||||||
| TREEFAM | TREEFAM_ID | TF319073 | |||||||
| TrEMBL | UniProtAcc | Q19979 | |||||||
| UniProt_GCRP | UniProtAcc | Q19979 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00066574 | ||||||||
| 00066575 | |||||||||
| 00066576 | |||||||||
| 00107713 | |||||||||
| Ortholog (38) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9975 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17025) | ||||
| Molecular_info | Corresponding_CDS | F32G8.5 | |||||||
| Corresponding_transcript | F32G8.5.1 | ||||||||
| Other_sequence | FG647850.1 | ||||||||
| Associated_feature | WBsf232394 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00031694 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046156 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027736 | ||||||||
| Expr1030441 | |||||||||
| Expr1150044 | |||||||||
| Expr2010347 | |||||||||
| Expr2028590 | |||||||||
| Drives_construct | WBCnstr00037333 | ||||||||
| Construct_product | WBCnstr00037333 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (152) | |||||||||
| SAGE_tag | SAGE:cccggagaga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gacaatatccagcatct | Strand | Antisense | |||||||
| SAGE:cccggagagaacttacg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | V | Position | 2.59176 | Error | 0.002582 | |||
| Positive | Positive_clone | F32G8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
