WormBase Tree Display for Gene: WBGene00000708

WBGene00000708 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: M199
  Identity: Version: 1
    Name: CGC_name: col-135 Person_evidence: WBPerson345
      Sequence_name: M199.5
      Molecular_name: M199.5a
        M199.5a.1
        CE33807
        M199.5b
        CE46447
        M199.5b.1
      Other_name: CELE_M199.5 Accession_evidence: NDB BX284604
      Public_name: col-135
    DB_info: Database: AceView gene 4P894
        WormQTL gene WBGene00000708
        WormFlux gene WBGene00000708
        NDB locus_tag CELE_M199.5
        Panther gene CAEEL|WormBase=WBGene00000708|UniProtKB=Q86D04
          family PTHR24023
        NCBI gene 3565413
        RefSeq protein NM_001268930.4
            NM_001268929.4
        TrEMBL UniProtAcc Q86D04
            G3MU58
        UniProt_GCRP UniProtAcc Q86D04
        OMIM gene 120260
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (55)
    Strain: WBStrain00050932
    RNASeq_FPKM (74)
    GO_annotation: 00009082
      00009083
      00009084
      00009085
    Ortholog (18)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be located in extracellular matrix and extracellular space. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome and multiple epiphyseal dysplasia 2. Is an ortholog of human COL9A2 (collagen type IX alpha 2 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070298 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:2256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
      DOID:0080046 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2218)
  Molecular_info: Corresponding_CDS: M199.5a
      M199.5b
    Corresponding_transcript: M199.5a.1
      M199.5b.1
    Other_sequence: HBC12341_1
      EX011737.1
  Experimental_info: Expr_pattern: Expr1014350
      Expr1030427
      Expr1154727
      Expr2010330
      Expr2028574
    Drives_construct: WBCnstr00037349
    Construct_product: WBCnstr00037349
    Microarray_results (11)
    Expression_cluster (216)
    Interaction: WBInteraction000470628
      WBInteraction000473782
      WBInteraction000474523
  Map_info: Map: IV Position: 12.8394
    Positive: Positive_clone: M199 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059172
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene