WormBase Tree Display for Gene: WBGene00000608
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WBGene00000608 | SMap | S_parent | Sequence | ZK1193 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | col-19 | Person_evidence | WBPerson345 | |||||
Sequence_name | ZK1193.1 | ||||||||
Molecular_name | ZK1193.1 | ||||||||
ZK1193.1.1 | |||||||||
CE05126 | |||||||||
Other_name | col19 | Accession_evidence | EMBL | M25481 | |||||
CELE_ZK1193.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | col-19 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00000608 | |||||
WormFlux | gene | WBGene00000608 | |||||||
NDB | locus_tag | CELE_ZK1193.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000608|UniProtKB=P18835 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 180397 | |||||||
RefSeq | protein | NM_001038488.6 | |||||||
SwissProt | UniProtAcc | P18835 | |||||||
TREEFAM | TREEFAM_ID | TF319043 | |||||||
UniProt_GCRP | UniProtAcc | P18835 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (25) | |||||||||
Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
Strain | WBStrain00007918 | ||||||||
WBStrain00007932 | |||||||||
WBStrain00007933 | |||||||||
WBStrain00033323 | |||||||||
WBStrain00034928 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (50) | |||||||||
Paralog (165) | |||||||||
Structured_description | Concise_description | col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. | Paper_evidence | WBPaper00000748 | |||||
WBPaper00002222 | |||||||||
WBPaper00005747 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
Automated_description | A structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK1193.1 | |||||||
Corresponding_CDS_history | ZK1193.1a:wp145 | ||||||||
ZK1193.1b:wp145 | |||||||||
Corresponding_transcript | ZK1193.1.1 | ||||||||
Other_sequence (62) | |||||||||
Associated_feature | WBsf235261 | ||||||||
WBsf235262 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern (13) | |||||||||
Drives_construct (40) | |||||||||
Construct_product | WBCnstr00000750 | ||||||||
WBCnstr00004851 | |||||||||
WBCnstr00010258 | |||||||||
WBCnstr00011689 | |||||||||
WBCnstr00012421 | |||||||||
WBCnstr00037431 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (272) | |||||||||
Interaction (298) | |||||||||
Map_info | Map | X | Position | -19.9103 | |||||
Positive | Positive_clone | ZK1193 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (68) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |