WormBase Tree Display for Gene: WBGene00000608
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WBGene00000608 | SMap | S_parent | Sequence | ZK1193 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | col | |||||
Allele (25) | ||||||
Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT] | |||||
Strain | WBStrain00007918 | |||||
WBStrain00007932 | ||||||
WBStrain00007933 | ||||||
WBStrain00033323 | ||||||
WBStrain00034928 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (18) | ||||||
Ortholog (50) | ||||||
Paralog (165) | ||||||
Structured_description | Concise_description | col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. | Paper_evidence | WBPaper00000748 | ||
WBPaper00002222 | ||||||
WBPaper00005747 | ||||||
Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 01 Sep 2004 00:00:00 | |||||
Automated_description | A structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | ZK1193.1 | ||||
Corresponding_CDS_history | ZK1193.1a:wp145 | |||||
ZK1193.1b:wp145 | ||||||
Corresponding_transcript | ZK1193.1.1 | |||||
Other_sequence (62) | ||||||
Associated_feature | WBsf235261 | |||||
WBsf235262 | ||||||
Experimental_info | RNAi_result (14) | |||||
Expr_pattern (13) | ||||||
Drives_construct (40) | ||||||
Construct_product | WBCnstr00000750 | |||||
WBCnstr00004851 | ||||||
WBCnstr00010258 | ||||||
WBCnstr00011689 | ||||||
WBCnstr00012421 | ||||||
WBCnstr00037431 | ||||||
Microarray_results (21) | ||||||
Expression_cluster (272) | ||||||
Interaction (298) | ||||||
Map_info | Map | X | Position | -19.9103 | ||
Positive | Positive_clone | ZK1193 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference (68) | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |