WormBase Tree Display for Gene: WBGene00000603
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| WBGene00000603 | SMap | S_parent | Sequence | C46A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-14 | Person_evidence | WBPerson345 | |||||
| Sequence_name | C46A5.3 | ||||||||
| Molecular_name | C46A5.3a | ||||||||
| C46A5.3a.1 | |||||||||
| CE29723 | |||||||||
| C46A5.3b | |||||||||
| CE08753 | |||||||||
| C46A5.3b.1 | |||||||||
| Other_name | col14 | Accession_evidence | EMBL | M25480 | |||||
| CELE_C46A5.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | col-14 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000603 | |||||
| WormFlux | gene | WBGene00000603 | |||||||
| NDB | locus_tag | CELE_C46A5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000603|UniProtKB=P18834 | |||||||
| family | PTHR24023 | ||||||||
| NCBI | gene | 177559 | |||||||
| RefSeq | protein | NM_001047459.3 | |||||||
| NM_001047458.7 | |||||||||
| SwissProt | UniProtAcc | P18834 | |||||||
| TrEMBL | UniProtAcc | B2MZB1 | |||||||
| UniProt_GCRP | UniProtAcc | P18834 | |||||||
| OMIM | gene | 120210 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (22) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present at all stages. Encodes collagen, col-6 family. [Cox and Hirsh 1985] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005895 | ||||||||
| 00005896 | |||||||||
| 00005897 | |||||||||
| 00039615 | |||||||||
| 00039616 | |||||||||
| 00039617 | |||||||||
| 00039618 | |||||||||
| 00107616 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-14 encodes a collagen protein that affects vulval morphology in a large-scale RNAi screen; mRNA expressed in embryos and transcript levels peak during each larval stage. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00002512 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome and multiple epiphyseal dysplasia 6. Is an ortholog of human COL9A1 (collagen type IX alpha 1 chain). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070301 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||
| DOID:2256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| DOID:0080046 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| Molecular_info | Corresponding_CDS | C46A5.3a | |||||||
| C46A5.3b | |||||||||
| Corresponding_CDS_history | C46A5.3:wp154 | ||||||||
| Corresponding_transcript | C46A5.3a.1 | ||||||||
| C46A5.3b.1 | |||||||||
| Other_sequence (103) | |||||||||
| Associated_feature | WBsf646112 | ||||||||
| WBsf646113 | |||||||||
| WBsf228574 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012014 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027593 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024827 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042579 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027228 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr615 | ||||||||
| Expr755 | |||||||||
| Expr1014750 | |||||||||
| Expr1030351 | |||||||||
| Expr1146560 | |||||||||
| Expr2010344 | |||||||||
| Expr2028587 | |||||||||
| Drives_construct | WBCnstr00037433 | ||||||||
| Construct_product | WBCnstr00037433 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (304) | |||||||||
| Interaction (140) | |||||||||
| Map_info | Map | IV | Position | 3.46907 | Error | 0.001292 | |||
| Positive | Positive_clone | C46A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
