WormBase Tree Display for Gene: WBGene00000597

WBGene00000597 SMap: S_parent: Sequence: F11H8
  Identity: Version: 1
    Name: CGC_name: col-8 Person_evidence: WBPerson345
      Sequence_name: F11H8.3
      Molecular_name: F11H8.3
        F11H8.3.1
        CE51260
      Other_name: col8 Accession_evidence: EMBL M25479
        CELE_F11H8.3 Accession_evidence: NDB BX284603
      Public_name: col-8
    DB_info: Database: AceView gene 3I110
        WormQTL gene WBGene00000597
        WormFlux gene WBGene00000597
        NDB locus_tag CELE_F11H8.3
        Panther gene CAEEL|WormBase=WBGene00000597|UniProtKB=P18833
          family PTHR24637
        NCBI gene 175981
        RefSeq protein NM_001382906.2
        SwissProt UniProtAcc P18833
        TREEFAM TREEFAM_ID TF319043
        UniProt_GCRP UniProtAcc P18833
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (23)
    Legacy_information: Transcript present in dauer larvae and adults.
      [C.elegansII] NMK. Transcript present in dauer larvae and adults;not detected in egg or L4. Encodes collagen,col-8 family includes col-19,35,39. [Cox and Hirsh 1985]
    RNASeq_FPKM (74)
    GO_annotation: 00039612
      00039613
      00039614
      00107611
    Ortholog (37)
    Paralog (165)
    Structured_description: Concise_description: col-8 encodes a collagen, individually dispensable for viability and gross morphology, which is specifically expressed in dauers and adults but not in eggs or L4 larvae, like col-7, col-18, and col-19; the amino- and carboxyl-terminal cysteine-rich regions of COL-8 are most closely related to those of COL-19, COL-35, and COL-39. Paper_evidence: WBPaper00000748
            WBPaper00001918
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F11H8.3
    Corresponding_CDS_history: F11H8.3:wp252
    Corresponding_transcript: F11H8.3.1
    Other_sequence (53)
    Associated_feature: WBsf226890
  Experimental_info: RNAi_result: WBRNAi00007476 Inferred_automatically: RNAi_primary
      WBRNAi00044419 Inferred_automatically: RNAi_primary
      WBRNAi00013152 Inferred_automatically: RNAi_primary
      WBRNAi00005369 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr765
      Expr1022298
      Expr1030349
      Expr1148367
      Expr2010436
      Expr2028676
    Drives_construct: WBCnstr00037438
    Construct_product: WBCnstr00037438
    Microarray_results (18)
    Expression_cluster (290)
    Interaction (104)
  Map_info: Map: III Position: -0.848504 Error: 0.000667
    Positive: Positive_clone: COL8
        F11H8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (24)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene