WormBase Tree Display for Gene: WBGene00000596
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WBGene00000596 | SMap | S_parent | Sequence | C15A11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | col-7 | Person_evidence | WBPerson345 | |||||
Sequence_name | C15A11.5 | ||||||||
Molecular_name | C15A11.5 | ||||||||
C15A11.5.1 | |||||||||
CE08173 | |||||||||
Other_name | col7 | Accession_evidence | EMBL | M25478 | |||||
CELE_C15A11.5 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | col-7 | ||||||||
DB_info | Database | AceView | gene | 1H979 | |||||
WormQTL | gene | WBGene00000596 | |||||||
WormFlux | gene | WBGene00000596 | |||||||
NDB | locus_tag | CELE_C15A11.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000596|UniProtKB=P18832 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 172494 | |||||||
RefSeq | protein | NM_059689.8 | |||||||
SwissProt | UniProtAcc | P18832 | |||||||
TREEFAM | TREEFAM_ID | TF316783 | |||||||
UniProt_GCRP | UniProtAcc | P18832 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (12) | |||||||||
Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00039609 | ||||||||
00039610 | |||||||||
00039611 | |||||||||
00107610 | |||||||||
Ortholog (38) | |||||||||
Paralog (170) | |||||||||
Structured_description | Concise_description | col-7 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed during the L2-to-dauer molt and the L4-to-adult molt. | Paper_evidence (2) | ||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Expressed in seam cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C15A11.5 | |||||||
Corresponding_transcript | C15A11.5.1 | ||||||||
Other_sequence | AW308621.1 | ||||||||
EW743722.1 | |||||||||
EX543803.1 | |||||||||
AI436840.1 | |||||||||
BG467601.1 | |||||||||
MH05176 | |||||||||
AI130090.1 | |||||||||
NAC00384_1 | |||||||||
EX542981.1 | |||||||||
CK854727.1 | |||||||||
Associated_feature | WBsf218004 | ||||||||
Experimental_info | RNAi_result | WBRNAi00040576 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040577 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002953 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115373 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002952 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr526 | ||||||||
Expr764 | |||||||||
Expr1011528 | |||||||||
Expr1144630 | |||||||||
Drives_construct | WBCnstr00012422 | ||||||||
WBCnstr00037439 | |||||||||
Construct_product | WBCnstr00012422 | ||||||||
WBCnstr00037439 | |||||||||
Microarray_results (28) | |||||||||
Expression_cluster (219) | |||||||||
Interaction (105) | |||||||||
Map_info | Map | I | Position | 2.06616 | |||||
Positive | Positive_clone | C15A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
COL7 | |||||||||
Pseudo_map_position | |||||||||
Reference (26) | |||||||||
Remark (2) | |||||||||
Method | Gene |