WormBase Tree Display for Gene: WBGene00000475
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| WBGene00000475 | Evidence | Person_evidence | WBPerson959 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cey-4 | Person_evidence | WBPerson959 | |||||
| Sequence_name | Y39A1C.3 | ||||||||
| Molecular_name | Y39A1C.3 | ||||||||
| Y39A1C.3.1 | |||||||||
| CE19148 | |||||||||
| Other_name | CELE_Y39A1C.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cey-4 | ||||||||
| DB_info | Database | AceView | gene | 3L956 | |||||
| WormQTL | gene | WBGene00000475 | |||||||
| WormFlux | gene | WBGene00000475 | |||||||
| NDB | locus_tag | CELE_Y39A1C.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000475|UniProtKB=G5EDV3 | |||||||
| family | PTHR11544 | ||||||||
| NCBI | gene | 176516 | |||||||
| RefSeq | protein | NM_066992.6 | |||||||
| TREEFAM | TREEFAM_ID | TF317306 | |||||||
| TrEMBL | UniProtAcc | G5EDV3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDV3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cey | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00031672 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00014861 | ||||||||
| 00014862 | |||||||||
| 00014863 | |||||||||
| 00014864 | |||||||||
| 00014865 | |||||||||
| 00107454 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000472 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000473 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000474 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003014 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cey-4 encodes a Y box-containing protein with no known function in vivo;CEY-4 associates with CGH-1 and CEY-2/3 in cytoplasmic particles of thegonad and early embryo. | Paper_evidence | WBPaper00026857 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 19 Apr 2007 00:00:00 | ||||||||
| Automated_description | Enables ribonucleoprotein complex binding activity. Predicted to be involved in regulation of gene expression. Part of ribonucleoprotein complex. Expressed in germ cell; germ line; and somatic cell. Is an ortholog of human YBX1 (Y-box binding protein 1) and YBX2 (Y-box binding protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39A1C.3 | |||||||
| Corresponding_transcript | Y39A1C.3.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf655483 | ||||||||
| WBsf667426 | |||||||||
| WBsf667427 | |||||||||
| WBsf994176 | |||||||||
| WBsf1015871 | |||||||||
| WBsf227533 | |||||||||
| WBsf227534 | |||||||||
| Transcription_factor | WBTranscriptionFactor000860 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00020353 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056129 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006124 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092049 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115792 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12062 | ||||||||
| Expr12064 | |||||||||
| Expr1022489 | |||||||||
| Expr1030277 | |||||||||
| Expr1159642 | |||||||||
| Expr2009934 | |||||||||
| Expr2028174 | |||||||||
| Drives_construct | WBCnstr00019849 | ||||||||
| Construct_product | WBCnstr00019856 | ||||||||
| WBCnstr00019857 | |||||||||
| Antibody | WBAntibody00002575 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (101) | |||||||||
| Map_info | Map | III | Position | 5.52201 | Error | 0.013733 | |||
| Positive | Positive_clone | Y39A1C | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4981 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025088 | ||||||||
| WBPaper00026857 | |||||||||
| WBPaper00033444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061562 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
