WormBase Tree Display for Gene: WBGene00000292
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WBGene00000292 | SMap | S_parent | Sequence | D2024 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 4H994 | |||||
WormQTL | gene | WBGene00000292 | |||||||
WormFlux | gene | WBGene00000292 | |||||||
NDB | locus_tag | CELE_D2024.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000292|UniProtKB=P34685 | |||||||
family | PTHR10653 | ||||||||
NCBI | gene | 177497 | |||||||
RefSeq | protein | NM_068744.6 | |||||||
SwissProt | UniProtAcc | P34685 | |||||||
TREEFAM | TREEFAM_ID | TF314822 | |||||||
UniProt_GCRP | UniProtAcc | P34685 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cap | ||||||||
Allele (20) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes homolog of actin capping protein, alpha subunit.Functional in yeast. [Waddle et al. 1993] | ||||||||
Strain (2) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP4216 | ||||||||
Ortholog (45) | |||||||||
Structured_description | Concise_description | cap-1 encodes an F-actin capping protein alpha subunit that affects fertility; likely expressed in touch receptor neurons. | Paper_evidence | WBPaper00001839 | |||||
WBPaper00004651 | |||||||||
WBPaper00005356 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Part of dynactin complex. Human ortholog(s) of this gene implicated in male infertility. Is an ortholog of human CAPZA1 (capping actin protein of muscle Z-line subunit alpha 1) and CAPZA2 (capping actin protein of muscle Z-line subunit alpha 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:12336 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24205) | ||||
Molecular_info | Corresponding_CDS | D2024.6 | |||||||
Corresponding_transcript | D2024.6.1 | ||||||||
Other_sequence (48) | |||||||||
Associated_feature | WBsf651895 | ||||||||
WBsf668004 | |||||||||
WBsf230233 | |||||||||
WBsf230234 | |||||||||
Experimental_info | RNAi_result | WBRNAi00088764 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008578 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090793 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007972 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043464 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00088657 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091225 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085703 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091224 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001944 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1048 | ||||||||
Expr5625 | |||||||||
Expr16434 | |||||||||
Expr1010907 | |||||||||
Expr1030189 | |||||||||
Expr1147458 | |||||||||
Expr2009715 | |||||||||
Expr2027954 | |||||||||
Drives_construct | WBCnstr00002987 | ||||||||
WBCnstr00009612 | |||||||||
WBCnstr00037600 | |||||||||
Construct_product | WBCnstr00037600 | ||||||||
Antibody | WBAntibody00001781 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (102) | |||||||||
Interaction (119) | |||||||||
Map_info | Map | IV | Position | 3.30656 | Error | 0.001843 | |||
Positive | Positive_clone | BW#ZA | |||||||
D2024 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference (18) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |