WormBase Tree Display for Gene: WBGene00000208
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| WBGene00000208 | Evidence | Accession_evidence | EMBL | AF197575 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y53F4B | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | trip-4 | Person_evidence | WBPerson555 | |||||
| Sequence_name | Y53F4B.15 | ||||||||
| Molecular_name | Y53F4B.15 | ||||||||
| Y53F4B.15.1 | |||||||||
| CE28135 | |||||||||
| Other_name | asc-1 | ||||||||
| CELE_Y53F4B.15 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | trip-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | CGC_name | trip-4 | ||||
| Other_name | asc-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trip | ||||||||
| Allele (227) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00014134 | ||||||||
| 00014135 | |||||||||
| 00014136 | |||||||||
| 00014137 | |||||||||
| 00107016 | |||||||||
| 00107017 | |||||||||
| 00107018 | |||||||||
| 00107019 | |||||||||
| Contained_in_operon | CEOP2656 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | asc-1 encodes a homolog of human activating signal cointegrator-1 and affects long-term survival and longivity in adults and daur larvae. | Paper_evidence | WBPaper00004228 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable transcription coactivator activity. Involved in dauer larval development. Predicted to be located in nucleus. Is an ortholog of human TRIP4 (thyroid hormone receptor interactor 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0000209 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12310) | ||||
| Molecular_info | Corresponding_CDS | Y53F4B.15 | |||||||
| Corresponding_CDS_history | Y53F4B.15:wp52 | ||||||||
| Corresponding_transcript | Y53F4B.15.1 | ||||||||
| Other_sequence (22) | |||||||||
| Associated_feature (11) | |||||||||
| Transcription_factor | WBTranscriptionFactor000425 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00020933 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033475 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057268 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018513 | ||||||||
| Expr1030127 | |||||||||
| Expr1160706 | |||||||||
| Expr2009445 | |||||||||
| Expr2027682 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | 23.975 | Error | 0.04432 | |||
| Positive | Positive_clone | Y53F4B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
